Adds bulk BCR/TCR synonym

Adds "bulk TCR assay" and "bulk BCR assay" as synonyms for TCR/BCR receptor repertoire sequencing assays respectively.
obi-ontology · Aug 31, 2023 · ec76a3b · ec76a3b
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diff --git a/src/ontology/modules/assays.owl b/src/ontology/modules/assays.owl
@@ -19680,6 +19680,7 @@
         <obo:IAO_0000115>A sequencing assay that determines the sequences of DNA or RNA molecules that encode the repertoire of T cell receptors within an input sample.</obo:IAO_0000115>
         <obo:IAO_0000117>Rebecca Jackson</obo:IAO_0000117>
         <obo:IAO_0000118>TCR repertoire sequencing assay</obo:IAO_0000118>
+        <obo:IAO_0000118>bulk TCR assay</obo:IAO_0000118>
         <obo:IAO_0000119>doi:10.1186/s12896-017-0379-9</obo:IAO_0000119>
         <obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1307</obo:IAO_0000233>
         <rdfs:label>T cell receptor repertoire sequencing assay</rdfs:label>
@@ -19695,6 +19696,7 @@
         <obo:IAO_0000117>Rebecca Jackson</obo:IAO_0000117>
         <obo:IAO_0000118>Antibody repertoire sequencing assay</obo:IAO_0000118>
         <obo:IAO_0000118>BCR repertoire sequencing assay</obo:IAO_0000118>
+        <obo:IAO_0000118>bulk BCR assay</obo:IAO_0000118>
         <obo:IAO_0000119>doi:10.1186/s12896-017-0379-9</obo:IAO_0000119>
         <obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1307</obo:IAO_0000233>
         <rdfs:label>B cell receptor repertoire sequencing assay</rdfs:label>

diff --git a/src/ontology/templates/assays.tsv b/src/ontology/templates/assays.tsv
@@ -420,8 +420,8 @@ OBI:0002984	capture Hi-C assay			cHi-C	A Hi-C assay in which a selection step is
 OBI:0002985	magnetic resonance imaging assay			MRI	An imaging assay in which nuclear magnetic resonance is used to produce information about the interior structure and composition of an input material entity.	url:https://en.wikipedia.org/wiki/Magnetic_resonance_imaging		Rebecca Jackson|Alexander D. Bartnik, ORCID:0000-0001-9676-7377|Lucas M. Serra, ORCID:0000-0002-2104-0568|Alexander D. Diehl, ORCID:0000-0001-9990-8331|Mackenzie T. Smith, ORCID:0000-0002-9821-4132|William D. Duncan, ORCID:0000-0001-9625-1899|Lauren M. Wishnie, ORCID:0000-0002-7245-3450				https://github.com/obi-ontology/obi/issues/1290	subclass		imaging assay						NMR instrument			 ('has role' some 'magnetic resonance imaging evaluant role')					(realizes some (concretizes some 'magnetic resonance pulse sequence protocol'))
 OBI:0002986	computed tomography imaging assay			CT scan|CAT scan|computed tomography scan	An imaging assay that uses a series of X-ray images to produce information about the interior structure and composition of an input material entity.	url:https://www.mayoclinic.org/tests-procedures/ct-scan/about/pac-20393675		Rebecca Jackson				https://github.com/obi-ontology/obi/issues/1290	subclass		imaging assay						computed tomography scanner								
 OBI:0002987	positron emission tomography imaging assay			PET scan|positron emission tomography scan	An imaging assay in which positron-emitting radionuclides are used to visualize functional processes of an input material entity.	url:https://en.wikipedia.org/wiki/Positron_emission_tomography		Rebecca Jackson				https://github.com/obi-ontology/obi/issues/1290	subclass		imaging assay						positron emission tomography scanner								
-OBI:0002990	T cell receptor repertoire sequencing assay			TCR repertoire sequencing assay	A sequencing assay that determines the sequences of DNA or RNA molecules that encode the repertoire of T cell receptors within an input sample.	doi:10.1186/s12896-017-0379-9		Rebecca Jackson				https://github.com/obi-ontology/obi/issues/1307	subclass		sequencing assay														
-OBI:0002991	B cell receptor repertoire sequencing assay			BCR repertoire sequencing assay|Antibody repertoire sequencing assay	A sequencing assay that determines the sequence of a DNA or RNA molecules that encode the repertoire of B cell receptors within an input sample.	doi:10.1186/s12896-017-0379-9		Rebecca Jackson				https://github.com/obi-ontology/obi/issues/1307	subclass		sequencing assay														
+OBI:0002990	T cell receptor repertoire sequencing assay			TCR repertoire sequencing assay|bulk TCR assay	A sequencing assay that determines the sequences of DNA or RNA molecules that encode the repertoire of T cell receptors within an input sample.	doi:10.1186/s12896-017-0379-9		Rebecca Jackson				https://github.com/obi-ontology/obi/issues/1307	subclass		sequencing assay														
+OBI:0002991	B cell receptor repertoire sequencing assay			BCR repertoire sequencing assay|Antibody repertoire sequencing assay|bulk BCR assay	A sequencing assay that determines the sequence of a DNA or RNA molecules that encode the repertoire of B cell receptors within an input sample.	doi:10.1186/s12896-017-0379-9		Rebecca Jackson				https://github.com/obi-ontology/obi/issues/1307	subclass		sequencing assay														
 OBI:0003009	ferritin assay				An assay that measures ferritin	OBI		James A. Overton, ORCID:0000-0001-5139-5557					equivalent		assay											ferritin complex			
 OBI:0003010	fibrinogen assay				An assay that measures fibrinogen	OBI		James A. Overton, ORCID:0000-0001-5139-5558					equivalent		assay											fibrinogen complex			
 OBI:0003011	iron assay				An analyte assay that measures the abundance of iron	OBI		James A. Overton, ORCID:0000-0001-5139-5559					equivalent		analyte assay					iron cation