Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Adds Illumina NextSeq 1000 device (and fixes minor error) #1731

Merged
merged 2 commits into from
Sep 20, 2023
Merged

Adds Illumina NextSeq 1000 device (and fixes minor error) #1731

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
8f17dae
Adds Illumina NextSeq 1000 device
sebastianduesing Sep 19, 2023
badcad3
Merge branch 'master' into ntr_1711
jamesaoverton Sep 20, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
41 changes: 31 additions & 10 deletions src/ontology/modules/devices.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9088,6 +9088,20 @@



<!-- http://purl.obolibrary.org/obo/OBI_0003550 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003550">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002926"/>
<obo:IAO_0000115>A CDC light trap that uses odorous gas from a human being as an attractant, by pumping it from the room where the human being sleeps into the trap.</obo:IAO_0000115>
<obo:IAO_0000117>John Judkins ORCID:0000-0001-6595-0902</obo:IAO_0000117>
<obo:IAO_0000118>human odour baited light trap</obo:IAO_0000118>
<obo:IAO_0000119>VEuPathDB</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1654</obo:IAO_0000233>
<rdfs:label>odor baited CDC light trap</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/OBI_0003551 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003551">
Expand All @@ -9098,19 +9112,26 @@
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1651</obo:IAO_0000233>
<rdfs:label>resting clay pot trap</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/OBI_0003606 -->

<!-- http://purl.obolibrary.org/obo/OBI_0003550 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003550">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0002926"/>
<obo:IAO_0000115>A CDC light trap that uses odorous gas from a human being as an attractant, by pumping it from the room where the human being sleeps into the trap.</obo:IAO_0000115>
<obo:IAO_0000117>John Judkins ORCID:0000-0001-6595-0902</obo:IAO_0000117>
<obo:IAO_0000118>human odour baited light trap</obo:IAO_0000118>
<obo:IAO_0000119>VEuPathDB</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1654</obo:IAO_0000233>
<rdfs:label>odor baited CDC light trap</rdfs:label>
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0003606">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OBI_0400103"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/OBI_0000304"/>
<owl:hasValue rdf:resource="http://purl.obolibrary.org/obo/OBI_0000759"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115>A DNA sequencer which is manufactured by the Illumina corporation using sequence-by-synthesis chemistry that fits on a benchtop and uses P1 and P2 flow cells.</obo:IAO_0000115>
<obo:IAO_0000117>Sebastian Duesing</obo:IAO_0000117>
<obo:IAO_0000118>NextSeq 1000</obo:IAO_0000118>
<obo:IAO_0000119>https://www.illumina.com/systems/sequencing-platforms/nextseq-1000-2000.html</obo:IAO_0000119>
<obo:IAO_0000233>https://github.com/obi-ontology/obi/issues/1711</obo:IAO_0000233>
<obo:IAO_0000234>GENEPIO</obo:IAO_0000234>
<rdfs:label>Illumina NextSeq 1000</rdfs:label>
</owl:Class>


Expand Down
1 change: 1 addition & 0 deletions src/ontology/templates/devices.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -467,6 +467,7 @@ OBI:0003493 SD Bioline Chikungunya IgM capture ELISA kit An assay kit that is
OBI:0003494 Advantage Chikungunya IgM Card kit An assay kit that is manufactured by J. Mitra to detect human IgM antibodies for Chikungunya virus with a protein microarray and double-antigen sandwich ELISA. John Judkins ORCID:0000-0001-6595-0902 assay kit 'J. Mitra' ('capable of' some 'microarray ELISA measuring Chikungunya IgM antibody')
OBI:0003550 odor baited CDC light trap human odour baited light trap A CDC light trap that uses odorous gas from a human being as an attractant, by pumping it from the room where the human being sleeps into the trap. VEuPathDB John Judkins ORCID:0000-0001-6595-0902 https://github.com/obi-ontology/obi/issues/1654 Centers for Disease Control and Prevention light trap
OBI:0003551 resting clay pot trap resting clay pot catch A resting arthropod trap that consists of a container composed primarily of clay. John Judkins ORCID:0000-0001-6595-0902 https://github.com/obi-ontology/obi/issues/1651 resting arthropod trap
OBI:0003606 Illumina NextSeq 1000 NextSeq 1000 A DNA sequencer which is manufactured by the Illumina corporation using sequence-by-synthesis chemistry that fits on a benchtop and uses P1 and P2 flow cells. https://www.illumina.com/systems/sequencing-platforms/nextseq-1000-2000.html Sebastian Duesing GENEPIO https://github.com/obi-ontology/obi/issues/1711 subclass DNA sequencer Illumina
OBI:0400005 A10-Analyzer A10-Analyzer ready for release A A10 is a flow_cytometer_analyser manufactured by Apogee. It uses an arc lamp as a light source, with choices of 75W Xe, 75W Xe/Hg or 100W Hg arc lamps. It has filters and collectors for up to three fluorescent parameters and two scatter parameters. It uses analog electronics. The A10 can be used for measuring the properties of individual cells. http://www.apogeeflow.com/flow_cytometry_products.htm John Quinn flow cytometer analyzer
OBI:0400006 A40-MiniFCM A40-MiniFCM ready for release A A40-MiniFCM is a flow_cytometer_analyser that allows for the choice of one of four lasers (375nm, 405nm,488nm, 532nm, 635nm), and PMTs and filters for collecting up to four parameters. It uses digital electronics. A military version of this cytometer is available as well. The A40-MiniFCM is geared towards the most demanding applications such as archaea, bacteria and large virus. http://www.apogeeflow.com/flow_cytometry_products.htm John Quinn flow cytometer analyzer
OBI:0400007 analog-to-digital converter analog-to-digital converter metadata incomplete A2D|A-D An analog-to-digital_converter is an instrument that converts an infinite resolution analog signal to a finite resolution digital signal. http://en.wiktionary.org/wiki/Analog-to-Digital_Converter The analog to digital converter transformed the analog output from the photomultiplier tube to a digital signal for collection. John Quinn|Melanie Courtot device signal conversion function
Expand Down
Loading