From c7bb3e4d220ee09a4cf9af77133fa5b18c015fd4 Mon Sep 17 00:00:00 2001 From: Sebastian Duesing Date: Wed, 10 Apr 2024 13:03:43 -0500 Subject: [PATCH] Add RO import for COB integration --- src/ontology/OntoFox_inputs/RO_input.txt | 26 ++++ src/ontology/OntoFox_outputs/RO_imports.owl | 164 ++++++++++++++++++++ src/ontology/catalog-v001.xml | 1 + src/ontology/obi-edit.owl | 1 + 4 files changed, 192 insertions(+) create mode 100644 src/ontology/OntoFox_inputs/RO_input.txt create mode 100644 src/ontology/OntoFox_outputs/RO_imports.owl diff --git a/src/ontology/OntoFox_inputs/RO_input.txt b/src/ontology/OntoFox_inputs/RO_input.txt new file mode 100644 index 00000000..c4742193 --- /dev/null +++ b/src/ontology/OntoFox_inputs/RO_input.txt @@ -0,0 +1,26 @@ +[URI of the OWL(RDF/XML) output file] +http://purl.obolibrary.org/obo/obi/dev/import/RO_imports.owl + +[Source ontology] +# OBO Relations Ontology +RO + +[Low level source term URIs] +http://purl.obolibrary.org/obo/RO_0000091 # has disposition +http://purl.obolibrary.org/obo/RO_0000092 # disposition of +http://purl.obolibrary.org/obo/RO_0000085 # has function +http://purl.obolibrary.org/obo/RO_0000079 # function of +http://purl.obolibrary.org/obo/RO_0000086 # has quality +http://purl.obolibrary.org/obo/RO_0000080 # quality of +http://purl.obolibrary.org/obo/RO_0002351 # has member +http://purl.obolibrary.org/obo/RO_0001025 # located in + +[Top level source term URIs and target direct superclass URIs] + +[Source term retrieval setting] +includeAllIntermediates + +[Source annotation URIs] +http://www.w3.org/2000/01/rdf-schema#label +copyTo http://purl.obolibrary.org/obo/IAO_0000111 +http://purl.obolibrary.org/obo/IAO_0000115 diff --git a/src/ontology/OntoFox_outputs/RO_imports.owl b/src/ontology/OntoFox_outputs/RO_imports.owl new file mode 100644 index 00000000..cd611ef0 --- /dev/null +++ b/src/ontology/OntoFox_outputs/RO_imports.owl @@ -0,0 +1,164 @@ + + + + + + + + + + + + + + + editor preferred term + The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English) + editor preferred term + + + + + + + + definition + definition + The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions. + definition + definition + + + + + + + + imported from + + + + + + + + + + + + + + + + + + + function of + a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence + + function of + + + + + + + + quality of + a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence + + quality of + + + + + + + + has function + a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence + + has function + + + + + + + + has quality + a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence + + has quality + + + + + + + + has disposition + a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence + + has disposition + + + + + + + + disposition of + inverse of has disposition + + disposition of + + + + + + + + + located in + a relation between two independent continuants, the target and the location, in which the target is entirely within the location + + located in + + + + + + + + + has member + has member is a mereological relation between a collection and an item. + + has member + + + + + + + diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml index 37551192..f01de949 100755 --- a/src/ontology/catalog-v001.xml +++ b/src/ontology/catalog-v001.xml @@ -21,6 +21,7 @@ + diff --git a/src/ontology/obi-edit.owl b/src/ontology/obi-edit.owl index aed655c4..36055e98 100644 --- a/src/ontology/obi-edit.owl +++ b/src/ontology/obi-edit.owl @@ -36,6 +36,7 @@ +