Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add RO import for COB integration #1779

Closed
wants to merge 1 commit into from
Closed

Add RO import for COB integration #1779

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
26 changes: 26 additions & 0 deletions src/ontology/OntoFox_inputs/RO_input.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,26 @@
[URI of the OWL(RDF/XML) output file]
http://purl.obolibrary.org/obo/obi/dev/import/RO_imports.owl

[Source ontology]
# OBO Relations Ontology
RO

[Low level source term URIs]
http://purl.obolibrary.org/obo/RO_0000091 # has disposition
http://purl.obolibrary.org/obo/RO_0000092 # disposition of
http://purl.obolibrary.org/obo/RO_0000085 # has function
http://purl.obolibrary.org/obo/RO_0000079 # function of
http://purl.obolibrary.org/obo/RO_0000086 # has quality
http://purl.obolibrary.org/obo/RO_0000080 # quality of
http://purl.obolibrary.org/obo/RO_0002351 # has member
http://purl.obolibrary.org/obo/RO_0001025 # located in

[Top level source term URIs and target direct superclass URIs]

[Source term retrieval setting]
includeAllIntermediates

[Source annotation URIs]
http://www.w3.org/2000/01/rdf-schema#label
copyTo http://purl.obolibrary.org/obo/IAO_0000111
http://purl.obolibrary.org/obo/IAO_0000115
164 changes: 164 additions & 0 deletions src/ontology/OntoFox_outputs/RO_imports.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,164 @@
<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/obi/dev/import/RO_imports.owl#"
xml:base="http://purl.obolibrary.org/obo/obi/dev/import/RO_imports.owl"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/obi/dev/import/RO_imports.owl"/>



<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->




<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111">
<obo:IAO_0000111 xml:lang="en">editor preferred term</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)</obo:IAO_0000115>
<rdfs:label xml:lang="en">editor preferred term</rdfs:label>
</owl:AnnotationProperty>



<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<obo:IAO_0000111>definition</obo:IAO_0000111>
<obo:IAO_0000111 xml:lang="en">definition</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<rdfs:label>definition</rdfs:label>
<rdfs:label xml:lang="en">definition</rdfs:label>
</owl:AnnotationProperty>



<!-- http://purl.obolibrary.org/obo/IAO_0000412 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000412">
<rdfs:label xml:lang="en">imported from</rdfs:label>
</owl:AnnotationProperty>



<!-- http://www.w3.org/2000/01/rdf-schema#label -->

<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/>



<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->




<!-- http://purl.obolibrary.org/obo/RO_0000079 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000079">
<obo:IAO_0000111 xml:lang="en">function of</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">a relation between a function and an independent continuant (the bearer), in which the function specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">function of</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0000080 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000080">
<obo:IAO_0000111 xml:lang="en">quality of</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">quality of</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0000085 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000085">
<obo:IAO_0000111 xml:lang="en">has function</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">has function</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0000086 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000086">
<obo:IAO_0000111 xml:lang="en">has quality</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">has quality</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0000091 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000091">
<obo:IAO_0000111 xml:lang="en">has disposition</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">has disposition</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0000092 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0000092">
<obo:IAO_0000111 xml:lang="en">disposition of</obo:IAO_0000111>
<obo:IAO_0000115>inverse of has disposition</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">disposition of</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0001025 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001025">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000111 xml:lang="en">located in</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">a relation between two independent continuants, the target and the location, in which the target is entirely within the location</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">located in</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0002351 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002351">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#IrreflexiveProperty"/>
<obo:IAO_0000111 xml:lang="en">has member</obo:IAO_0000111>
<obo:IAO_0000115>has member is a mereological relation between a collection and an item.</obo:IAO_0000115>
<obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/ro.owl"/>
<rdfs:label xml:lang="en">has member</rdfs:label>
</owl:ObjectProperty>
</rdf:RDF>



<!-- Generated by the OWL API (version 4.5.25) https://github.com/owlcs/owlapi -->

1 change: 1 addition & 0 deletions src/ontology/catalog-v001.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -21,6 +21,7 @@
<uri name="http://purl.obolibrary.org/obo/obi/dev/import/OPL_imports.owl" uri="OntoFox_outputs/OPL_imports.owl"/>
<uri name="http://purl.obolibrary.org/obo/obi/dev/import/PATO_imports.owl" uri="OntoFox_outputs/PATO_imports.owl"/>
<uri name="http://purl.obolibrary.org/obo/obi/dev/import/PR_imports.owl" uri="OntoFox_outputs/PR_imports.owl"/>
<uri name="http://purl.obolibrary.org/obo/obi/dev/import/RO_imports.owl" uri="OntoFox_outputs/RO_imports.owl"/>
<uri name="http://purl.obolibrary.org/obo/obi/dev/import/SO_imports.owl" uri="OntoFox_outputs/SO_imports.owl"/>
<uri name="http://purl.obolibrary.org/obo/obi/dev/import/Uberon_imports.owl" uri="OntoFox_outputs/Uberon_imports.owl"/>
<uri name="http://purl.obolibrary.org/obo/obi/dev/import/UO_imports.owl" uri="OntoFox_outputs/UO_imports.owl"/>
Expand Down
1 change: 1 addition & 0 deletions src/ontology/obi-edit.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -36,6 +36,7 @@
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/obi/dev/import/OPL_imports.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/obi/dev/import/PATO_imports.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/obi/dev/import/PR_imports.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/obi/dev/import/RO_imports.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/obi/dev/import/SO_imports.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/obi/dev/import/UO_imports.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/obi/dev/import/UO_instance_imports.owl"/>
Expand Down
Loading