Making all definitions language tagged

src/ontology/templates/biobank-specimens.tsv

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 ontology ID	label	editor preferred term	has curation status	alternative term	definition	definition source	example of usage	term editor	editor note	curator note	ontology term requester	term tracker item	logical type	 specimen collection process	gross anatomical part	collection process input	URI
-ID	A rdfs:label	A editor preferred term	AI has curation status	A alternative term SPLIT=|	A definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	C specimen and (is_specified_output_of some %)	C specimen and (is_specified_output_of some 'specimen collection process') and ('derives from' some %)	C specimen and (is_specified_output_of some ('specimen collection process' and has_specified_input some %))	
+ID	A rdfs:label	A editor preferred term	AI has curation status	A alternative term SPLIT=|AL definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	C specimen and (is_specified_output_of some %)	C specimen and (is_specified_output_of some 'specimen collection process') and ('derives from' some %)	C specimen and (is_specified_output_of some ('specimen collection process' and has_specified_input some %))	
 OBI:0002500	amniotic fluid specimen		ready for release		A specimen that is derived from amniotic fluid.	Chris Stoeckert, Penn Medicine Biobank		Chris Stoeckert					equivalent	collecting specimen from organism	amniotic fluid		UBERON_0000173
 OBI:0002501	bile specimen		ready for release		A specimen that is derived from bile.	Chris Stoeckert, Penn Medicine Biobank		Chris Stoeckert					equivalent	collecting specimen from organism	bile		UBERON_0001970
 OBI:0002502	cerebrospinal fluid specimen		ready for release		A specimen that is derived from cerbrospinal fluid.	Chris Stoeckert, Penn Medicine Biobank		Chris Stoeckert					equivalent	collecting specimen from organism	cerebrospinal fluid		UBERON_0001359

src/ontology/templates/biopsy.tsv

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 ontology ID	label	editor preferred term	has curation status	alternative term	definition	definition source	example of usage	term editor	editor note	curator note	ontology term requester	term tracker item	logical type	parent class	material anatomical entity	input device	output entity
-ID	LABEL	A editor preferred term	AI has curation status	A alternative term SPLIT=|	A definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	CI	C 'has_specified_input' some %	C 'has_specified_input' some %	C 'has_specified_output' some %
+ID	LABEL	A editor preferred term	AI has curation status	A alternative term SPLIT=|AL definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	CI	C 'has_specified_input' some %	C 'has_specified_input' some %	C 'has_specified_output' some %
 OBI:0002650	biopsy		ready for release		A specimen collection that obtains a sample of tissue or cell from a living multicellular organism body for diagnostic purposes by means intended to be minimally invasive.	https://en.wikipedia.org/wiki/Biopsy	Biopsy of a potentially cancerous mole.	Nicole Vasilevsky|Damion Dooley					subclass	collecting specimen from organism	material anatomical entity	device	pre-mortem specimen
 OBI:0002651	image guided biopsy		ready for release	image-guided biopsy|imaging guided biopsy|image guided needle biopsy	A biopsy which uses an imaging procedure to guide a needle biopsy.	https://www.mayoclinic.org/diseases-conditions/cancer/in-depth/biopsy/art-20043922	Image-guided needle biopsy allows a doctor to biopsy suspicious areas that aren't readily seen or felt through skin, such as in a prostate gland.	Damion Dooley					subclass	needle biopsy			
 OBI:0002652	computed tomography assisted biopsy		ready for release	Computed Tomography Assisted Biopsy|CT Guided Biopsy|CT Assisted Biopsy|Computed Tomography-Guided Needle Biopsy	A needle biopsy guided by real-time computed tomography (CT) scan images.	http://purl.obolibrary.org/obo/NCIT_C137909	A CT Guided Biopsy is a procedure performed by a radiologist to obtain a small tissue sample through a needle.	Damion Dooley					subclass	image guided biopsy		computed tomography scanner	

src/ontology/templates/devices.tsv

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 ontology ID	label	editor preferred term	has curation status	alternative term	definition	definition source	example of usage	term editor	editor note	curator note	ontology term requester	term tracker item	logical type	parent class	function	has part	part of	manufactured by	associated axioms
-ID	LABEL	A editor preferred term	AI has curation status	A alternative term SPLIT=|	A definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	C %	C 'has function' some % SPLIT=|	C 'has part' some % SPLIT=|	C 'part of' some %	C is_manufactured_by value %	C % SPLIT=|
+ID	LABEL	A editor preferred term	AI has curation status	A alternative term SPLIT=|AL definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	C %	C 'has function' some % SPLIT=|	C 'has part' some % SPLIT=|	C 'part of' some %	C is_manufactured_by value %	C % SPLIT=|
 OBI:0000038	chromatography column	chromatography column	metadata incomplete		Chromatography column in chemistry is a tube and contents (typically glass) used to purify individual chemical compounds from mixtures of compounds. It is often used for preparative applications on scales from micrograms up to kilograms.	http://en.wikipedia.org/wiki/Column_chromatography		Frank Gibson		open tracker https://sourceforge.net/tracker/index.php?func=detail&aid=2881353&group_id=177891&atid=886178				device	('material separation function' and ('realized in' only 'preparative chromatography'))	container			
 OBI:0000041	pump valve switch	pump valve switch	metadata incomplete		A pump valve switch is a cardinal part of a liquid chromatography instrument that controls the flow.	OBI		OBI Instrument branch	FG:I would assume this should be a pump valve control switch and it would not be specific to a liquid chromatography instrument					device	mechanical function				
 OBI:0000048	chromatography device	chromatography device	metadata complete	chromatography instrument	A device that facilitates the separation of mixtures. The function of a chromatography device involves passing a mixture dissolved in a ""mobile phase"" through a stationary phase, which separates the analyte to be measured from other molecules in the mixture and allows it to be isolated.	http://en.wikipedia.org/wiki/Chromatography		Frank Gibson		open tracker https://sourceforge.net/tracker/index.php?func=detail&aid=2881353&group_id=177891&atid=886178				device	contain function|environment control function|measure function|material separation function				

src/ontology/templates/epitope-assays.tsv

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 Ontology ID	label	editor preferred term	has curation status	alternative term	IEDB alternative term	definition	definition source	example of usage	term editor	editor note	curator note	ontology term requester	term tracker item	logical type	parent class	material processing technique	detection technique	reagent	input	output	MHC source	target entity	target context	unit
-ID	A rdfs:label	A editor preferred term	AI has curation status	A alternative term SPLIT=|	A IEDB alternative term	A definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	C %	C 'has part' some % SPLIT=|	C 'has part' some ( % and 'detection technique') SPLIT=|	C (has_specified_input some %) and (realizes some ('reagent role' and ('inheres in' some %)))	C has_specified_input some %	C has_specified_output some %	C has_specified_input some (% and ('has part' some 'MHC protein complex'))	C has_specified_output some ('is about' some %)	C has_specified_output some ('is about' some ( 'has assay target context' some %))	C has_specified_output some ('has measurement unit label' value %)
+ID	A rdfs:label	A editor preferred term	AI has curation status	A alternative term SPLIT=|	A IEDB alternative termAL definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	C %	C 'has part' some % SPLIT=|	C 'has part' some ( % and 'detection technique') SPLIT=|	C (has_specified_input some %) and (realizes some ('reagent role' and ('inheres in' some %)))	C has_specified_input some %	C has_specified_output some %	C has_specified_input some (% and ('has part' some 'MHC protein complex'))	C has_specified_output some ('is about' some %)	C has_specified_output some ('is about' some ( 'has assay target context' some %))	C has_specified_output some ('has measurement unit label' value %)
 OBI:0001194	ELISPOT assay measuring epitope specific transforming growth factor-beta production by T cells				TGFb release|ELISPOT	An enzyme-linked immunospot assay that detects transforming growth factor-beta production by T cells.	IEDB		PERSON:Randi Vita, Jason Greenbaum, Bjoern Peters					equivalent	enzyme-linked immunospot assay							('transforming growth factor beta production' and ('process is result of' some 'MHC:epitope complex binding to TCR'))		
 OBI:0001196	cytometric bead array assay measuring epitope specific IP-10 production by T cells				CXCL10/IP-10 release|cytometric bead array	A cytometric bead array assay that detects IP-10 production by T cells.	IEDB		PERSON:Randi Vita, Jason Greenbaum, Bjoern Peters					equivalent	antigen detection by cytometric bead array assay							('IP-10 production' and ('process is result of' some 'MHC:epitope complex binding to TCR'))		
 OBI:0001198	assay measuring epitope specific interleukin-27 production by T cells				IL-27 release|biological activity	A T cell epitope specific cytokine production assay that detects interleukin-27 production by T cells.	IEDB		PERSON:Randi Vita, Jason Greenbaum, Bjoern Peters					equivalent	assay							('interleukin-27 production' and ('process is result of' some 'MHC:epitope complex binding to TCR'))		

src/ontology/templates/obsolete.tsv

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 ontology ID	label	editor preferred term	has curation status	alternative term	IEDB Alternative Terms	definition	definition source	example of usage	term editor	editor note	curator note	ontology term requester	term tracker item	logical type	parent class	obsolete	obsolescence reason	replacement term	Randi notes on obsolescence
-ID	LABEL	A editor preferred term	AI has curation status	A alternative term SPLIT=|	A IEDB alternative term	A definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	C %	AT deprecated^^xsd:boolean	AI has obsolescence reason	AI term replaced by	
+ID	LABEL	A editor preferred term	AI has curation status	A alternative term SPLIT=|	A IEDB alternative termAL definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	C %	AT deprecated^^xsd:boolean	AI has obsolescence reason	AI term replaced by	
 OBI:0000050	obsolete_platform		metadata incomplete			A platform is an object_aggregate that is the set of instruments and software needed to perform a process. definition_source: OBI.	OBI Instrument branch		OBI Instrument branch					subclass	Obsolete Class	true	IAO:0000103		
 OBI:0000100	obsolete_role of being first subject treated		metadata complete			First subject treated role is a study subject role borne by the subject realized in the application of the process specified in intervention study design with no previous study subject realizing the role prior in the study	OBI	Rat 1A; first enrolled patient to receive treatment	Role Branch					subclass	Obsolete Class	true	IAO:0000103		
 OBI:0000109	obsolete biological vector role		metadata complete			a biological vector role is a material to be added role that is realized by the process of transmitting material to the organism that is the target of the transmission.	OBI and Wikipedia	1983 Sci. Amer. Jan. 58/2 Plasmids are routinely used as vectors for introducing foreign DNA into bacteria.|Some epidemiological aspects and vector role of tick infestation on layers in the Faisalabad district (Pakistan). http://journals.cambridge.org/action/displayAbstract;jsessionid=0373164489D00868AEEF2C556EB4FD29.tomcat1?fromPage=online&aid=624280	GROUP:  Role Branch					subclass	Obsolete Class	true	IAO:0000103		

src/ontology/templates/organizations.tsv

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 ontology ID	label	editor preferred term	has curation status	alternative term	definition	definition source	example of usage	term editor	editor note	curator note	ontology term requester	term tracker item	logical type	type
-ID	LABEL	A editor preferred term	AI has curation status	A alternative term SPLIT=|	A definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	TYPE SPLIT=|
+ID	LABEL	A editor preferred term	AI has curation status	A alternative term SPLIT=|AL definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	TYPE SPLIT=|
 OBI:0000462	Affymetrix	Affymetrix			An organization which supplies technology, tools and protocols for use in high throughput applications		Affymetrix supplied microarray							manufacturer|material supplier
 OBI:0000752	Thermo	Thermo						Philippe Rocca-Serra						manufacturer
 OBI:0000753	Waters	Waters						Philippe Rocca-Serra						manufacturer

src/ontology/templates/sample-collection.tsv

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 ontology ID	label	editor preferred term	has curation status	alternative term	definition	definition source	example of usage	term editor	editor note	curator note	ontology term requester	term tracker item	logical type	parent class	specimen type
-ID	LABEL	A editor preferred term	AI has curation status	A alternative term SPLIT=|	A definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	C %	C has_specified_output some (% and 'has role' some 'specimen role')
+ID	LABEL	A editor preferred term	AI has curation status	A alternative term SPLIT=|AL definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	CLASS_TYPE	C %	C has_specified_output some (% and 'has role' some 'specimen role')
 OBI:0002904	adult arthropod specimen collection process			collection of adults	A live arthropod specimen collection process in which the arthropods are in the adult stage.	MIRO:30000052		John Judkins				https://github.com/obi-ontology/obi/issues/1217		live arthropod specimen collection process	
 OBI:0002905	animal-biting arthropod specimen collection by aspiration			animal biting catch	An arthropod specimen collection by aspiration that occurs while the arthropod is biting an animal.	MIRO:30000012		John Judkins				https://github.com/obi-ontology/obi/issues/1217		arthropod specimen collection by aspiration	
 OBI:0002906	animal-biting outdoor arthropod specimen collection by aspiration			animal biting catch - outdoors	An animal-biting arthropod specimen collection by aspiration that occurs outside a building.	MIRO:30000014		John Judkins				https://github.com/obi-ontology/obi/issues/1217		animal-biting arthropod specimen collection by aspiration	

src/ontology/templates/specimen-assay-data.tsv

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 ontology ID	label	editor preferred term	has curation status	alternative term	definition	definition source	example of usage	term editor	editor note	curator note	ontology term requester	term tracker item	axiom
-ID	LABEL	A editor preferred term	AI has curation status	A alternative term SPLIT=|	A definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	EC %
+ID	LABEL	A editor preferred term	AI has curation status	A alternative term SPLIT=|AL definition	A definition source SPLIT=|	A example of usage SPLIT=|	A term editor SPLIT=|	A editor note SPLIT=|	A curator note SPLIT=|	A ontology term requester	A term tracker item	EC %
 OBI:0003243	blood assay datum				A data item that is the specified output of a blood assay.	VEuPathDB		John Judkins				https://github.com/obi-ontology/obi/issues/1428	('data item' and is_specified_output_of some 'blood assay')
 OBI:0003244	blood microbiology datum				An organism detection datum that is the specified output of a blood microbiology assay.	VEuPathDB		John Judkins				https://github.com/obi-ontology/obi/issues/1428	('organism detection datum' and is_specified_output_of some 'blood microbiology assay')
 OBI:0003245	feces assay datum				A data item that is the specified output of a feces assay.	VEuPathDB		John Judkins				https://github.com/obi-ontology/obi/issues/1428	('data item' and is_specified_output_of some 'feces assay')