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COB Transition Demo 2 #1819

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wants to merge 35 commits into from
Closed

COB Transition Demo 2 #1819

wants to merge 35 commits into from

Commits on Sep 3, 2024

  1. Replace OMO import with versioned OMO import

    @sebastianduesing
    sebastianduesing committed Sep 3, 2024
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  2. Add OntoFox import for RO

    @sebastianduesing
    sebastianduesing committed Sep 3, 2024
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  3. Update IAO import module & switch to computed intermediates

    @sebastianduesing
    sebastianduesing committed Sep 3, 2024
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  4. Replace BFO import with COB import

    @sebastianduesing
    sebastianduesing committed Sep 3, 2024
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  5. Rename alternative term to alternative label column in templates

    @sebastianduesing
    sebastianduesing committed Sep 3, 2024
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  6. Replace 'inheres in' with 'characteristic of' and 'bearer of' with 'h… 

    …as characteristic'
    @sebastianduesing
    sebastianduesing committed Sep 3, 2024
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Commits on Sep 4, 2024

  1. Redirect usages of CHEBI:atom to COB:atom

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  2. Redirect usages of CHEBI:molecular entity to COB:molecular entity

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  3. Redirect usages of OBI:device to COB:device and obsolete OBI:device

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  4. Redirect usages of IAO:measurement datum to COB:measurement datum

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  5. Redirect usages of BFO:realizes to COB:realizes

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  6. Redirect usages of RO:concretizes to COB:concretizes

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  7. Remove unused duplicate 'action specification' IAO term

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  8. Remove unused 'information carrier' IAO term

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  9. Remove unused BFO_0000028

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  10. Line order update to obi-edit.owl by Protege

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  11. Remove BFO:0000001 and its usages

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  12. Remove BFO:0000002 and resolve its usages

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  13. Drop external-byhand

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  14. Remove BFO:0000003 and resolve its usages

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  15. Remove BFO:0000004 and resolve its usages

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  16. Remove BFO:0000019 and resolve its usages

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  17. Remove all non-OMO usages of BFO_0000031

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  18. Remove BFO:0000035 and resolve its usages

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  19. Run make modules

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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  20. Fix unsatisfiable classes

    @sebastianduesing
    sebastianduesing committed Sep 4, 2024
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Commits on Sep 5, 2024

  1. Fix multiple-textual-definitions-violation

    @sebastianduesing
    sebastianduesing committed Sep 5, 2024
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  2. Relabel is_specified_input_of to is specified input of

    @sebastianduesing
    sebastianduesing committed Sep 5, 2024
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  3. Relabel is_specified_output_of to is specified output of

    @sebastianduesing
    sebastianduesing committed Sep 5, 2024
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  4. Relabel has_specified_input to has specified input

    @sebastianduesing
    sebastianduesing committed Sep 5, 2024
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  5. Relabel has_specified_output to has specified output

    @sebastianduesing
    sebastianduesing committed Sep 5, 2024
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  6. Relabel planned process to completely executed planned process

    @sebastianduesing
    sebastianduesing committed Sep 5, 2024
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  7. Relabel processed material to processed material entity

    @sebastianduesing
    sebastianduesing committed Sep 5, 2024
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Commits on Sep 16, 2024

  1. Relabel duplicates

    @sebastianduesing
    sebastianduesing committed Sep 16, 2024
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  2. Update obi.owl and obi-base.owl artifacts

    @jamesaoverton
    jamesaoverton committed Sep 16, 2024
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