From 02879c21a2d1c6ed7c4093092da2bd67da01f040 Mon Sep 17 00:00:00 2001 From: Chris Mungall Date: Fri, 21 Oct 2016 08:37:42 -0700 Subject: [PATCH] retrospective release --- bspo.obo | 1947 ++++++++++++++++++ bspo.owl | 5859 ++++++++++++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 7806 insertions(+) create mode 100644 bspo.obo create mode 100644 bspo.owl diff --git a/bspo.obo b/bspo.obo new file mode 100644 index 0000000..8148458 --- /dev/null +++ b/bspo.obo @@ -0,0 +1,1947 @@ +format-version: 1.2 +data-version: releases/2014-02-03 +date: 22:01:2014 15:38 +saved-by: wasila.dahdul +auto-generated-by: OBO-Edit 2.3-beta5 +synonymtypedef: human "synonym typically used in the context of human anatomy" NARROW +synonymtypedef: vertebrate "synonym typically used in the context of vertebrate anatomy" NARROW +default-namespace: spatial +namespace-id-rule: * BSPO:$sequence(7,0,999999999)$ +remark: based on FBql +ontology: bspo +owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nAnnotationAssertion( \"immediately_posterior_to\"^^xsd:string)\nAnnotationAssertion( \"right_of\"^^xsd:string)\nAnnotationAssertion( \"immediately_left_of\"^^xsd:string)\nAnnotationAssertion( \"approximately_perpendicular_to\"^^xsd:string)\nAnnotationAssertion( \"superficial_to\"^^xsd:string)\nAnnotationAssertion( \"in_lateral_side_of\"^^xsd:string)\nAnnotationAssertion( \"immediately_dorsal_to\"^^xsd:string)\nAnnotationAssertion( \"in_proximal_side_of\"^^xsd:string)\nAnnotationAssertion( \"immediately_anterior_to\"^^xsd:string)\nAnnotationAssertion( \"in_posterior_side_of\"^^xsd:string)\nAnnotationAssertion( \"distalmost_part_of\"^^xsd:string)\nAnnotationAssertion( \"left_of\"^^xsd:string)\nAnnotationAssertion( \"postaxial_to\"^^xsd:string)\nAnnotationAssertion( \"in_left_side_of\"^^xsd:string)\nAnnotationAssertion( \"part_of\"^^xsd:string)\nAnnotationAssertion( \"immediately_proximal_to\"^^xsd:string)\nAnnotationAssertion( \"immediately_distal_to\"^^xsd:string)\nAnnotationAssertion( \"in_superficial_part_of\"^^xsd:string)\nAnnotationAssertion( \"contralateral_to\"^^xsd:string)\nAnnotationAssertion( \"anterior_to\"^^xsd:string)\nAnnotationAssertion( \"has_start_point\"^^xsd:string)\nAnnotationAssertion( \"ventral_to\"^^xsd:string)\nAnnotationAssertion( \"preaxialmost_part_of\"^^xsd:string)\nAnnotationAssertion( \"has_part\"^^xsd:string)\nAnnotationAssertion( \"has_end_point\"^^xsd:string)\nAnnotationAssertion( \"proximal_to\"^^xsd:string)\nAnnotationAssertion( \"in_anterior_side_of\"^^xsd:string)\nAnnotationAssertion( \"proximalmost_part_of\"^^xsd:string)\nAnnotationAssertion( \"in_right_side_of\"^^xsd:string)\nAnnotationAssertion( \"preaxial_to\"^^xsd:string)\nAnnotationAssertion( \"intersects_midsagittal_plane_of\"^^xsd:string)\nAnnotationAssertion( \"immediately_superficial_to\"^^xsd:string)\nAnnotationAssertion( \"distal_to\"^^xsd:string)\nAnnotationAssertion( \"obsolete_surrounds\"^^xsd:string)\nAnnotationAssertion( \"immediately_right_of\"^^xsd:string)\nAnnotationAssertion( \"passes_through\"^^xsd:string)\nAnnotationAssertion( \"surface_of\"^^xsd:string)\nAnnotationAssertion( \"deep_to\"^^xsd:string)\nAnnotationAssertion( \"orthogonal_to\"^^xsd:string)\nAnnotationAssertion( \"adjacent_to\"^^xsd:string)\nAnnotationAssertion( \"immediately_deep_to\"^^xsd:string)\nAnnotationAssertion( \"dorsal_to\"^^xsd:string)\nAnnotationAssertion( \"follows_axis\"^^xsd:string)\nAnnotationAssertion( \"in_deep_part_of\"^^xsd:string)\nAnnotationAssertion( \"immediately_ventral_to\"^^xsd:string)\nAnnotationAssertion( \"has_axis\"^^xsd:string)\nAnnotationAssertion( \"in_distal_side_of\"^^xsd:string)\nAnnotationAssertion( \"posterior_to\"^^xsd:string)\nAnnotationAssertion( \"starts_axis\"^^xsd:string)\nAnnotationAssertion( \"vicinity_of\"^^xsd:string)\nAnnotationAssertion( \"postaxialmost_part_of\"^^xsd:string)\nAnnotationAssertion( \"opposite_to\"^^xsd:string)\nAnnotationAssertion( \"obsolete_surrounded_by\"^^xsd:string)\nAnnotationAssertion( \"anatomical_relation\"^^xsd:string)\nAnnotationAssertion( \"finishes_axis\"^^xsd:string)\nAnnotationAssertion( \"overlaps\"^^xsd:string)\nAnnotationAssertion( \"ipsilateral_to\"^^xsd:string)\n) + +[Term] +id: BSPO:0000000 +name: left side +def: "The side of an organism that is left of the sagittal plane." [BSPO:cjm] +synonym: "left" EXACT [] +is_a: BSPO:0000054 ! anatomical side +relationship: BSPO:0000110 BSPO:0000007 ! left_of right side +relationship: BSPO:0015007 BSPO:0000017 ! starts_axis left-right axis + +[Term] +id: BSPO:0000001 +name: upper side +comment: Consider merging with superior side. +synonym: "upper" EXACT [] +is_a: BSPO:0000054 ! anatomical side +relationship: BSPO:0015007 BSPO:0000011 ! starts_axis upper-lower axis + +[Term] +id: BSPO:0000002 +name: lower side +comment: Consider merging with inferior side. +synonym: "lower" EXACT [] +is_a: BSPO:0000054 ! anatomical side +relationship: BSPO:0015001 BSPO:0000011 ! finishes_axis upper-lower axis + +[Term] +id: BSPO:00000021 +name: deep-superficial gradient (obsolete) +comment: was made obsolete because the ID had too many digits +is_obsolete: true +replaced_by: BSPO:0000021 + +[Term] +id: BSPO:0000003 +name: deep side +synonym: "deep" EXACT [] +is_a: BSPO:0000054 ! anatomical side +relationship: BSPO:0000107 BSPO:0000004 ! deep_to superficial side +relationship: BSPO:0015007 BSPO:0000012 ! starts_axis deep-superficial axis + +[Term] +id: BSPO:0000004 +name: superficial side +synonym: "superficial" EXACT [] +is_a: BSPO:0000054 ! anatomical side +relationship: BSPO:0015001 BSPO:0000012 ! finishes_axis deep-superficial axis + +[Term] +id: BSPO:0000005 +name: anatomical surface +def: "A 2D surface of an anatomical continuant." [BSPO:cjm] +comment: to be merged into CARO +synonym: "surface" EXACT [] +xref: FMA:24137 +is_a: CARO:0000010 ! anatomical boundary + +[Term] +id: BSPO:0000006 +name: anatomical margin +def: "Fiat anatomical region extending a short distance from the boundary of an object inwards." [BSPO:cjm] +synonym: "edge" EXACT [] +synonym: "margin" EXACT [] +is_a: BSPO:0000070 ! anatomical region + +[Term] +id: BSPO:0000007 +name: right side +def: "The side of an organism that is right of the sagittal plane." [BSPO:cjm, BSPO:wd] +synonym: "right" EXACT [] +is_a: BSPO:0000054 ! anatomical side +relationship: BSPO:0015001 BSPO:0000017 ! finishes_axis left-right axis + +[Term] +id: BSPO:0000008 +name: parasagittal plane +def: "Sagittal plane that divides a bilateral body into unequal left and right parts." [BSPO:mah] +synonym: "parasagittal section" EXACT [] +is_a: BSPO:0000417 ! sagittal plane + +[Term] +id: BSPO:0000009 +name: midsagittal plane +def: "Sagittal plane that divides bilateral body into equal left and right parts." [BSPO:mah] +comment: only in bilaterally symmetrical organisms +synonym: "median plane" RELATED [] +synonym: "median sagittal plane" EXACT [FMA:74563] +synonym: "midline plane" EXACT [] +synonym: "midsagittal section" EXACT [] +xref: FMA:74563 +is_a: BSPO:0000417 ! sagittal plane + +[Term] +id: BSPO:0000010 +name: anatomical axis +def: "A straight line through space, intersecting an anatomical entity." [BSPO:cjm] +comment: Axis directions are defined in terms of axes. +xref: http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG +is_a: CARO:0000008 ! anatomical line +relationship: BSPO:0015006 CARO:0000000 ! passes_through anatomical entity + +[Term] +id: BSPO:0000011 +name: upper-lower axis +def: "An anatomical axis determined by gravity." [BSPO:cjm] +synonym: "superior-inferior axis" RELATED [] +is_a: BSPO:0000010 ! anatomical axis + +[Term] +id: BSPO:0000012 +name: deep-superficial axis +def: "An axis that extends from an internal position to a more external position in the body or body part." [BSPO:PM] +comment: Muscles are frequently categorized as 'deep', 'intermediate', and 'superficial'. +is_a: BSPO:0000010 ! anatomical axis + +[Term] +id: BSPO:0000013 +name: anterior-posterior axis +def: "An axis that extends through an organism from head end to opposite end of body or tail." [BSPO:cjm] +comment: In sponges, AP is used to indicate the direction of movement [in larval stage] (as it is in other metazoans that move, e.g., the basal bilaterians). [PM] +synonym: "A-P axis" EXACT [] +synonym: "anteroposterior axis" EXACT [] +synonym: "AP axis" EXACT [] +synonym: "cephalocaudal axis" NARROW [http://en.wikipedia.org/wiki/Anatomical_terms_of_location] +synonym: "craniocaudal axis" NARROW vertebrate [] +synonym: "longitudinal axis" RELATED [] +synonym: "rostral/caudal" NARROW vertebrate [] +synonym: "rostrocaudal axis" NARROW vertebrate [] +is_a: BSPO:0000010 ! anatomical axis +intersection_of: BSPO:0000010 ! anatomical axis +intersection_of: BSPO:0015005 BSPO:0000018 ! orthogonal_to transverse plane +relationship: BSPO:0000104 BSPO:0000016 ! approximately_perpendicular_to dorsal-ventral axis +relationship: BSPO:0015005 BSPO:0000018 ! orthogonal_to transverse plane + +[Term] +id: BSPO:0000014 +name: apical-basal axis relative to substrate +def: "An axis that extends through an organism or organism part from the part of the organism or organism part attached to a substrate (basal) to the furthest from the attachment (apical). Note that the apical-basal axis is often used for organismal parts where there is attachment via a basal lamina or other structure." [BSPO:mah] +synonym: "apical/basal" EXACT [] +synonym: "longitudinal axis" RELATED [] +is_a: BSPO:0000010 ! anatomical axis + +[Term] +id: BSPO:0000015 +name: proximal-distal axis +def: "An axis that extends from the point of attachment of a structure (proximal) to the point furthest away from the plane of attachment (distal)." [BSPO:curators, http://en.wikipedia.org/wiki/Anatomical_terms_of_location] +comment: In some communities, proximal and distal are used when specifying the position of parts of elements that are contained within the body, such as gill arches or vertebral spines. In these cases, use of the classes medial-lateral axis or medial-external axis are more appropriate. +synonym: "proximal/distal" EXACT [] +synonym: "proximodistal" EXACT [] +is_a: BSPO:0000010 ! anatomical axis + +[Term] +id: BSPO:0000016 +name: dorsal-ventral axis +def: "An axis that is approximately perpendicular to the anterior-posterior axis and that extends through the horizontal plane of the body." [BSPO:curators] +synonym: "anterior-posterior axis" NARROW human [] +synonym: "D-V axis" EXACT [] +synonym: "dorsoventral axis" EXACT [] +synonym: "DV axis" EXACT [] +is_a: BSPO:0000010 ! anatomical axis +intersection_of: BSPO:0000010 ! anatomical axis +intersection_of: BSPO:0015005 BSPO:0000019 ! orthogonal_to horizontal plane +relationship: BSPO:0015005 BSPO:0000019 ! orthogonal_to horizontal plane + +[Term] +id: BSPO:0000017 +name: left-right axis +def: "An axis that bisects an organism from left to right sides of body, through a sagittal plane." [BSPO:cjm] +synonym: "dextro-sinister axis" EXACT [] +synonym: "L-R axis" EXACT [] +synonym: "left to right axis" EXACT [] +synonym: "LR axis" EXACT [] +synonym: "R-L axis" EXACT [] +synonym: "right to left axis" EXACT [] +synonym: "right-left axis" EXACT [] +synonym: "RL axis" EXACT [] +is_a: BSPO:0000010 ! anatomical axis +intersection_of: BSPO:0000010 ! anatomical axis +intersection_of: BSPO:0015005 BSPO:0000417 ! orthogonal_to sagittal plane +relationship: BSPO:0015005 BSPO:0000417 ! orthogonal_to sagittal plane + +[Term] +id: BSPO:0000018 +name: transverse plane +def: "Anatomical plane that divides body into anterior and posterior parts." [BSPO:mah] +synonym: "axial plane" EXACT [] +synonym: "axial section" EXACT [] +synonym: "cross-section" RELATED [] +synonym: "transverse section" EXACT [] +xref: FMA:12247 +is_a: BSPO:0000400 ! anatomical plane + +[Term] +id: BSPO:0000019 +name: horizontal plane +def: "Anatomical plane that divides bilateral body into dorsal and ventral parts." [BSPO:mah] +synonym: "coronal section" RELATED [] +synonym: "frontal plane" EXACT [] +synonym: "frontal section" RELATED [] +synonym: "horizontal anatomical plane" EXACT [FMA:52810] +synonym: "horizontal section" EXACT [] +xref: FMA:52810 +is_a: BSPO:0000400 ! anatomical plane + +[Term] +id: BSPO:0000020 +name: upper-lower gradient +def: "Anatomical gradient that is distributed along the upper-lower axis." [BSPO:wd] +is_a: BSPO:0000051 ! anatomical gradient +intersection_of: BSPO:0000051 ! anatomical gradient +intersection_of: BSPO:0015002 BSPO:0000011 ! follows_axis upper-lower axis +relationship: BSPO:0015002 BSPO:0000011 ! follows_axis upper-lower axis + +[Term] +id: BSPO:0000021 +name: deep-superficial gradient +def: "Anatomical gradient that is distributed along the deep-superficial axis." [BSPO:wd] +is_a: BSPO:0000051 ! anatomical gradient +intersection_of: BSPO:0000051 ! anatomical gradient +intersection_of: BSPO:0015002 BSPO:0000012 ! follows_axis deep-superficial axis +relationship: BSPO:0015002 BSPO:0000012 ! follows_axis deep-superficial axis + +[Term] +id: BSPO:0000022 +name: superior side +def: "The side that is higher relative to the substrate." [BSPO:curators] +synonym: "cranial" RELATED [] +synonym: "superior" EXACT [] +is_a: BSPO:0000054 ! anatomical side + +[Term] +id: BSPO:0000023 +name: apical-basal gradient +def: "Anatomical gradient that is distributed along the apical-basal axis." [BSPO:wd] +is_a: BSPO:0000051 ! anatomical gradient +intersection_of: BSPO:0000051 ! anatomical gradient +intersection_of: BSPO:0015002 BSPO:0000014 ! follows_axis apical-basal axis relative to substrate +relationship: BSPO:0015002 BSPO:0000014 ! follows_axis apical-basal axis relative to substrate + +[Term] +id: BSPO:0000024 +name: proximal-distal gradient +def: "Anatomical gradient that is distributed along the proximal-distal axis." [BSPO:wd] +is_a: BSPO:0000051 ! anatomical gradient +intersection_of: BSPO:0000051 ! anatomical gradient +intersection_of: BSPO:0015002 BSPO:0000015 ! follows_axis proximal-distal axis +relationship: BSPO:0015002 BSPO:0000015 ! follows_axis proximal-distal axis + +[Term] +id: BSPO:0000025 +name: inferior side +def: "The side that is lower relative to the substrate." [BSPO:curators] +synonym: "caudal" RELATED [] +synonym: "inferior" EXACT [] +is_a: BSPO:0000054 ! anatomical side + +[Term] +id: BSPO:0000026 +name: antero-dorsal region +def: "Anatomical region that overlaps the anterior and dorsal regions of a body or body part." [BSPO:wd] +synonym: "anterodorsal region " EXACT [] +is_a: BSPO:0000071 ! anterior region +is_a: BSPO:0000079 ! dorsal region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000055 ! overlaps anterior side +intersection_of: RO:0002131 BSPO:0000063 ! overlaps dorsal side +relationship: RO:0002131 BSPO:0000055 ! overlaps anterior side +relationship: RO:0002131 BSPO:0000063 ! overlaps dorsal side +created_by: Melissa Haendel +creation_date: 2009-06-15T01:01:38Z + +[Term] +id: BSPO:0000027 +name: antero-ventral region +def: "Anatomical region that overlaps the anterior and ventral regions of a body or body part." [BSPO:wd] +synonym: "anteroventral region " EXACT [] +is_a: BSPO:0000071 ! anterior region +is_a: BSPO:0000084 ! ventral region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000055 ! overlaps anterior side +intersection_of: RO:0002131 BSPO:0000068 ! overlaps ventral side +relationship: RO:0002131 BSPO:0000055 ! overlaps anterior side +relationship: RO:0002131 BSPO:0000068 ! overlaps ventral side +created_by: Melissa Haendel +creation_date: 2009-06-15T01:04:59Z + +[Term] +id: BSPO:0000028 +name: postero-lateral region +def: "Anatomical region that overlaps the posterior and lateral regions of the body or body part." [BSPO:wd] +synonym: "posterolateral region" EXACT [] +is_a: BSPO:0000072 ! posterior region +is_a: BSPO:0000082 ! lateral region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000056 ! overlaps posterior side +intersection_of: RO:0002131 BSPO:0000066 ! overlaps lateral side +relationship: RO:0002131 BSPO:0000056 ! overlaps posterior side +relationship: RO:0002131 BSPO:0000066 ! overlaps lateral side +created_by: Melissa Haendel +creation_date: 2009-06-15T01:06:01Z + +[Term] +id: BSPO:0000029 +name: antero-lateral region +def: "Anatomical region that overlaps the anterior and lateral regions of a body or body part." [BSPO:wd] +synonym: "anterolateral region" EXACT [] +is_a: BSPO:0000071 ! anterior region +is_a: BSPO:0000082 ! lateral region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000055 ! overlaps anterior side +intersection_of: RO:0002131 BSPO:0000066 ! overlaps lateral side +relationship: RO:0002131 BSPO:0000055 ! overlaps anterior side +relationship: RO:0002131 BSPO:0000066 ! overlaps lateral side +created_by: Melissa Haendel +creation_date: 2009-06-15T01:07:18Z + +[Term] +id: BSPO:0000030 +name: postero-dorsal region +def: "Anatomical region that overlaps the posterior and dorsal regions of the body or body part." [BSPO:wd] +synonym: "posterodorsal region" EXACT [] +is_a: BSPO:0000072 ! posterior region +is_a: BSPO:0000079 ! dorsal region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000056 ! overlaps posterior side +intersection_of: RO:0002131 BSPO:0000063 ! overlaps dorsal side +relationship: RO:0002131 BSPO:0000056 ! overlaps posterior side +relationship: RO:0002131 BSPO:0000063 ! overlaps dorsal side +created_by: Melissa Haendel +creation_date: 2009-06-15T01:08:13Z + +[Term] +id: BSPO:0000031 +name: upper region +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000001 ! overlaps upper side +relationship: RO:0002131 BSPO:0000001 ! overlaps upper side + +[Term] +id: BSPO:0000032 +name: lower region +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000002 ! overlaps lower side +relationship: RO:0002131 BSPO:0000002 ! overlaps lower side + +[Term] +id: BSPO:0000033 +name: deep region +def: "Anatomical region located deep within an organism or structure." [BSPO:wd] +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000003 ! overlaps deep side +relationship: RO:0002131 BSPO:0000003 ! overlaps deep side + +[Term] +id: BSPO:0000034 +name: superficial region +def: "Anatomical region superficially located on the body or body part." [BSPO:wd] +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000004 ! overlaps superficial side +relationship: RO:0002131 BSPO:0000004 ! overlaps superficial side + +[Term] +id: BSPO:0000035 +name: postero-ventral region +def: "Anatomical region that overlaps the posterior and ventral regions of a body or body part." [BSPO:wd] +synonym: "posteroventral region" EXACT [] +is_a: BSPO:0000072 ! posterior region +is_a: BSPO:0000084 ! ventral region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000056 ! overlaps posterior side +intersection_of: RO:0002131 BSPO:0000068 ! overlaps ventral side +relationship: RO:0002131 BSPO:0000056 ! overlaps posterior side +relationship: RO:0002131 BSPO:0000068 ! overlaps ventral side +created_by: Melissa Haendel +creation_date: 2009-06-15T01:08:38Z + +[Term] +id: BSPO:0000036 +name: anterior-most region +synonym: "anterior-most" EXACT [] +synonym: "anteriormost" EXACT [] +is_a: BSPO:0000071 ! anterior region +created_by: Melissa Haendel +creation_date: 2009-06-16T08:49:03Z + +[Term] +id: BSPO:0000037 +name: posterior-most region +synonym: "posterior-most" EXACT [] +synonym: "posteriormost" EXACT [] +is_a: BSPO:0000072 ! posterior region +created_by: Melissa Haendel +creation_date: 2009-06-16T08:49:50Z + +[Term] +id: BSPO:0000038 +name: dorsal-most region +synonym: "dorsal-most" EXACT [] +synonym: "dorsalmost" EXACT [] +is_a: BSPO:0000079 ! dorsal region +created_by: Melissa Haendel +creation_date: 2009-06-16T08:50:26Z + +[Term] +id: BSPO:0000039 +name: ventral-most region +synonym: "ventral-most" EXACT [] +synonym: "ventralmost" EXACT [] +is_a: BSPO:0000084 ! ventral region +created_by: Melissa Haendel +creation_date: 2009-06-16T08:51:07Z + +[Term] +id: BSPO:0000040 +name: upper/lower compartment boundary +is_a: BSPO:0000092 ! anatomical compartment boundary +intersection_of: BSPO:0000092 ! anatomical compartment boundary +intersection_of: BSPO:0015003 BSPO:0000011 ! has_axis upper-lower axis +relationship: BSPO:0015003 BSPO:0000011 ! has_axis upper-lower axis + +[Term] +id: BSPO:0000041 +name: deep/superficial compartment boundary +is_a: BSPO:0000092 ! anatomical compartment boundary +intersection_of: BSPO:0000092 ! anatomical compartment boundary +intersection_of: BSPO:0015003 BSPO:0000012 ! has_axis deep-superficial axis +relationship: BSPO:0015003 BSPO:0000012 ! has_axis deep-superficial axis + +[Term] +id: BSPO:0000042 +name: antero-medial margin +def: "Anatomical margin that is located on the antero-medial region of the body or body part." [BSPO:wd] +synonym: "anteromedial margin" EXACT [] +is_a: BSPO:0000050 ! antero-medial region +is_a: BSPO:0000671 ! anterior margin +is_a: BSPO:0000683 ! medial margin +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000055 ! overlaps anterior side +intersection_of: RO:0002131 BSPO:0000067 ! overlaps medial side +relationship: RO:0002131 BSPO:0000055 ! overlaps anterior side +relationship: RO:0002131 BSPO:0000067 ! overlaps medial side +created_by: Melissa Haendel +creation_date: 2009-09-10T08:49:57Z + +[Term] +id: BSPO:0000043 +name: apical/basal compartment boundary +is_a: BSPO:0000092 ! anatomical compartment boundary +intersection_of: BSPO:0000092 ! anatomical compartment boundary +intersection_of: BSPO:0015003 BSPO:0000014 ! has_axis apical-basal axis relative to substrate +relationship: BSPO:0015003 BSPO:0000014 ! has_axis apical-basal axis relative to substrate + +[Term] +id: BSPO:0000044 +name: proximal/distal compartment boundary +is_a: BSPO:0000092 ! anatomical compartment boundary +intersection_of: BSPO:0000092 ! anatomical compartment boundary +intersection_of: BSPO:0015003 BSPO:0000015 ! has_axis proximal-distal axis +relationship: BSPO:0015003 BSPO:0000015 ! has_axis proximal-distal axis + +[Term] +id: BSPO:0000045 +name: antero-lateral margin +def: "Anatomical margin that is located on the antero-lateral region of the body or body part." [BSPO:wd] +synonym: "anterolateral margin" EXACT [] +is_a: BSPO:0000029 ! antero-lateral region +is_a: BSPO:0000671 ! anterior margin +is_a: BSPO:0000682 ! lateral margin +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000055 ! overlaps anterior side +intersection_of: RO:0002131 BSPO:0000066 ! overlaps lateral side +relationship: RO:0002131 BSPO:0000055 ! overlaps anterior side +relationship: RO:0002131 BSPO:0000066 ! overlaps lateral side +created_by: Melissa Haendel +creation_date: 2009-09-10T08:50:37Z + +[Term] +id: BSPO:0000046 +name: postero-medial margin +def: "Anatomical margin that is located on the postero-medial region of the body or body part." [BSPO:wd] +synonym: "posteromedial margin" EXACT [] +is_a: BSPO:0000064 ! postero-medial region +is_a: BSPO:0000672 ! posterior margin +is_a: BSPO:0000683 ! medial margin +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000056 ! overlaps posterior side +intersection_of: RO:0002131 BSPO:0000067 ! overlaps medial side +relationship: RO:0002131 BSPO:0000056 ! overlaps posterior side +relationship: RO:0002131 BSPO:0000067 ! overlaps medial side +created_by: Melissa Haendel +creation_date: 2009-09-10T08:51:07Z + +[Term] +id: BSPO:0000047 +name: postero-lateral margin +def: "Anatomical margin that is located on the postero-lateral region of the body or body part." [BSPO:wd] +synonym: "posterolateral margin" EXACT [] +is_a: BSPO:0000028 ! postero-lateral region +is_a: BSPO:0000672 ! posterior margin +is_a: BSPO:0000682 ! lateral margin +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000056 ! overlaps posterior side +intersection_of: RO:0002131 BSPO:0000066 ! overlaps lateral side +relationship: RO:0002131 BSPO:0000056 ! overlaps posterior side +relationship: RO:0002131 BSPO:0000066 ! overlaps lateral side +created_by: Melissa Haendel +creation_date: 2009-09-10T08:51:42Z + +[Term] +id: BSPO:0000048 +name: dorso-medial margin +def: "Anatomical margin that is located on the dorso-medial region of the body or body part." [BSPO:wd] +synonym: "dorso-medial margin" EXACT [] +is_a: BSPO:0000069 ! dorso-medial region +is_a: BSPO:0000679 ! dorsal margin +is_a: BSPO:0000683 ! medial margin +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000063 ! overlaps dorsal side +intersection_of: RO:0002131 BSPO:0000067 ! overlaps medial side +relationship: RO:0002131 BSPO:0000063 ! overlaps dorsal side +relationship: RO:0002131 BSPO:0000067 ! overlaps medial side +created_by: Melissa Haendel +creation_date: 2009-09-10T08:52:04Z + +[Term] +id: BSPO:0000049 +name: ventro-medial margin +def: "Anatomical margin that is located on the ventro-medial region of the body or body part." [BSPO:wd] +synonym: "ventromedial margin" EXACT [] +is_a: BSPO:0000112 ! ventro-medial region +is_a: BSPO:0000683 ! medial margin +is_a: BSPO:0000684 ! ventral margin +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000067 ! overlaps medial side +intersection_of: RO:0002131 BSPO:0000068 ! overlaps ventral side +relationship: RO:0002131 BSPO:0000067 ! overlaps medial side +relationship: RO:0002131 BSPO:0000068 ! overlaps ventral side +created_by: Melissa Haendel +creation_date: 2009-09-10T08:52:48Z + +[Term] +id: BSPO:0000050 +name: antero-medial region +def: "Anatomical region that overlaps the anterior and medial regions of the body or body part." [BSPO:wd] +synonym: "anteromedial region" EXACT [] +is_a: BSPO:0000071 ! anterior region +is_a: BSPO:0000083 ! medial region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000055 ! overlaps anterior side +intersection_of: RO:0002131 BSPO:0000067 ! overlaps medial side +relationship: RO:0002131 BSPO:0000055 ! overlaps anterior side +relationship: RO:0002131 BSPO:0000067 ! overlaps medial side +created_by: Melissa Haendel +creation_date: 2009-09-10T08:55:32Z + +[Term] +id: BSPO:0000051 +name: anatomical gradient +def: "Material anatomical entity defined by change in the value of some quantity per unit of distance across some spatial axis." [BSPO:cjm] +xref: FBql:00005254 +is_a: CARO:0000006 ! material anatomical entity + +[Term] +id: BSPO:0000052 +name: anterior-posterior gradient +def: "Anatomical gradient that is distributed along the anterior-posterior axis." [BSPO:wd] +xref: FBcv:0000142 +xref: FBql:00005256 +is_a: BSPO:0000051 ! anatomical gradient +intersection_of: BSPO:0000051 ! anatomical gradient +intersection_of: BSPO:0015003 BSPO:0000013 ! has_axis anterior-posterior axis +relationship: BSPO:0015003 BSPO:0000013 ! has_axis anterior-posterior axis + +[Term] +id: BSPO:0000053 +name: dorsal-ventral gradient +def: "Anatomical gradient that is distributed along the dorsal-ventral axis." [BSPO:wd] +xref: FBcv:0000143 +xref: FBql:00005255 +is_a: BSPO:0000051 ! anatomical gradient +intersection_of: BSPO:0000051 ! anatomical gradient +intersection_of: BSPO:0015003 BSPO:0000016 ! has_axis dorsal-ventral axis +relationship: BSPO:0015003 BSPO:0000016 ! has_axis dorsal-ventral axis + +[Term] +id: BSPO:0000054 +name: anatomical side +def: "An anatomical region bounded by a plane perpendicular to an axis through the middle." [BSPO:cjm] +xref: FBql:00005841 +is_a: BSPO:0000070 ! anatomical region + +[Term] +id: BSPO:0000055 +name: anterior side +def: "An anatomical region that is the entire part of an anatomical structure anterior to a transverse plane and bounded on one side by the same transverse plane." [BSPO:RW] +synonym: "anterior" EXACT [] +synonym: "rostral" EXACT [] +xref: FBcv:0000053 +xref: FBql:00005848 +is_a: BSPO:0000054 ! anatomical side +relationship: BSPO:0000096 BSPO:0000056 ! anterior_to posterior side +relationship: BSPO:0000113 BSPO:0000056 ! opposite_to posterior side +relationship: BSPO:0015007 BSPO:0000013 ! starts_axis anterior-posterior axis + +[Term] +id: BSPO:0000056 +name: posterior side +def: "An anatomical region that is the entire part of an anatomical structure posterior to a transverse plane and bounded on one side by the same transverse plane." [BSPO:RW, BSPO:wd] +synonym: "caudal" NARROW vertebrate [] +synonym: "posterior" EXACT [] +xref: FBcv:0000065 +xref: FBql:00005849 +is_a: BSPO:0000054 ! anatomical side +relationship: BSPO:0000099 BSPO:0000055 ! posterior_to anterior side +relationship: BSPO:0015001 BSPO:0000013 ! finishes_axis anterior-posterior axis + +[Term] +id: BSPO:0000057 +name: apical side +def: "Anatomical side that is located on the apical end of an organism or structure." [BSPO:wd] +synonym: "apical" EXACT [] +xref: FBcv:0000054 +xref: FBql:00005854 +is_a: BSPO:0000054 ! anatomical side +relationship: BSPO:0000113 BSPO:0000058 ! opposite_to basal side +relationship: BSPO:0015007 BSPO:0000014 ! starts_axis apical-basal axis relative to substrate + +[Term] +id: BSPO:0000058 +name: basal side +def: "Anatomical side that is located on the basal end of an organism or structure." [BSPO:wd] +comment: The part of the organism attached to a substrate. Axis of symmetry. +synonym: "basal" EXACT [] +xref: FBcv:0000055 +xref: FBql:00005855 +is_a: BSPO:0000054 ! anatomical side +relationship: BSPO:0015001 BSPO:0000014 ! finishes_axis apical-basal axis relative to substrate + +[Term] +id: BSPO:0000059 +name: central side +def: "Anatomical side that is centrally located on an organism or structure." [BSPO:wd] +comment: central is not an axis direction +synonym: "central" EXACT [] +xref: FBcv:0000056 +xref: FBql:00015851 +is_a: BSPO:0000054 ! anatomical side + +[Term] +id: BSPO:0000060 +name: contralateral side +def: "On the opposite side." [BSPO:cjm] +comment: inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation. +synonym: "contralateral" EXACT [] +xref: FBcv:0000057 +xref: FBql:00005851 +is_a: BSPO:0000054 ! anatomical side + +[Term] +id: BSPO:0000061 +name: proximal side +synonym: "proximal" EXACT [] +xref: FBcv:0000066 +xref: FBql:00005852 +is_a: BSPO:0000054 ! anatomical side +relationship: BSPO:0000113 BSPO:0000062 ! opposite_to distal side +relationship: BSPO:0015007 BSPO:0000015 ! starts_axis proximal-distal axis + +[Term] +id: BSPO:0000062 +name: distal side +def: "Anatomical side that is distally located on an organism or structure." [BSPO:wd] +synonym: "distal" EXACT [] +xref: FBcv:0000058 +xref: FBql:00005853 +is_a: BSPO:0000054 ! anatomical side +relationship: BSPO:0000097 BSPO:0000061 ! distal_to proximal side +relationship: BSPO:0015001 BSPO:0000015 ! finishes_axis proximal-distal axis + +[Term] +id: BSPO:0000063 +name: dorsal side +def: "An anatomical region that is the entire part of an anatomical structure dorsal to a horizontal plane and bounded on one side by the same transverse plane." [BSPO:wd] +synonym: "dorsal" EXACT [] +xref: FBcv:0000059 +xref: FBql:00005842 +is_a: BSPO:0000054 ! anatomical side +relationship: BSPO:0000098 BSPO:0000066 ! dorsal_to lateral side +relationship: BSPO:0000113 BSPO:0000068 ! opposite_to ventral side +relationship: BSPO:0015007 BSPO:0000016 ! starts_axis dorsal-ventral axis + +[Term] +id: BSPO:0000064 +name: postero-medial region +def: "Anatomical region that overlaps the posterior and medial regions of the body or body part." [BSPO:wd] +synonym: "posteromedial region" EXACT [] +is_a: BSPO:0000072 ! posterior region +is_a: BSPO:0000083 ! medial region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000056 ! overlaps posterior side +intersection_of: RO:0002131 BSPO:0000067 ! overlaps medial side +relationship: RO:0002131 BSPO:0000056 ! overlaps posterior side +relationship: RO:0002131 BSPO:0000067 ! overlaps medial side +created_by: Melissa Haendel +creation_date: 2009-09-10T08:56:39Z + +[Term] +id: BSPO:0000065 +name: ipsilateral side +def: "On the same side" [BSPO:cjm] +comment: inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation. +synonym: "ipsilateral" EXACT [] +xref: FBcv:0000062 +xref: FBql:00005850 +is_a: BSPO:0000054 ! anatomical side + +[Term] +id: BSPO:0000066 +name: lateral side +synonym: "lateral" EXACT [] +xref: FBcv:0000063 +xref: FBql:00005844 +is_a: BSPO:0000054 ! anatomical side + +[Term] +id: BSPO:0000067 +name: medial side +comment: a point in the centre of the organism (where the left-right axis intersects the midsagittal plane) +synonym: "medial" EXACT [] +xref: FBcv:0000064 +xref: FBql:00005847 +is_a: BSPO:0000054 ! anatomical side + +[Term] +id: BSPO:0000068 +name: ventral side +def: "An anatomical region that is the entire part of an anatomical structure ventral to a horizontal plane and bounded on one side by the same horizontal plane." [BSPO:RW, BSPO:wd] +synonym: "ventral" EXACT [] +xref: FBcv:0000070 +xref: FBql:00005843 +is_a: BSPO:0000054 ! anatomical side +relationship: BSPO:0015001 BSPO:0000016 ! finishes_axis dorsal-ventral axis + +[Term] +id: BSPO:0000069 +name: dorso-medial region +def: "Anatomical region that overlaps the dorsal and medial regions of the body or body part." [BSPO:wd] +synonym: "dorsomedial region" EXACT [] +is_a: BSPO:0000079 ! dorsal region +is_a: BSPO:0000083 ! medial region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000063 ! overlaps dorsal side +intersection_of: RO:0002131 BSPO:0000067 ! overlaps medial side +relationship: RO:0002131 BSPO:0000063 ! overlaps dorsal side +relationship: RO:0002131 BSPO:0000067 ! overlaps medial side +created_by: Melissa Haendel +creation_date: 2009-09-10T08:57:22Z + +[Term] +id: BSPO:0000070 +name: anatomical region +def: "A 3D region in space without well-defined compartmental boundaries; for example, the dorsal region of an ectoderm." [BSPO:cjm] +comment: to be merged into CARO +xref: FBql:00005841 +is_a: CARO:0000003 ! anatomical structure + +[Term] +id: BSPO:0000071 +name: anterior region +def: "Anatomical region anteriorly located on the body or body part." [BSPO:wd] +xref: FBql:00005848 +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000055 ! overlaps anterior side +relationship: RO:0002131 BSPO:0000055 ! overlaps anterior side + +[Term] +id: BSPO:0000072 +name: posterior region +def: "Anatomical region posteriorly located on the body or body part." [BSPO:wd] +xref: FBql:00005849 +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000056 ! overlaps posterior side +relationship: RO:0002131 BSPO:0000056 ! overlaps posterior side + +[Term] +id: BSPO:0000073 +name: apical region +def: "Anatomical region located on the apical end on the body or body part." [BSPO:wd] +xref: FBql:00005854 +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000057 ! overlaps apical side +relationship: RO:0002131 BSPO:0000057 ! overlaps apical side + +[Term] +id: BSPO:0000074 +name: basal region +def: "Anatomical region located basally on the body or body part." [BSPO:wd] +xref: FBql:00005855 +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000058 ! overlaps basal side +relationship: RO:0002131 BSPO:0000058 ! overlaps basal side + +[Term] +id: BSPO:0000075 +name: central region +def: "Anatomical region centrally located on the body or body part." [BSPO:wd] +xref: FBql:00015851 +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000059 ! overlaps central side +relationship: RO:0002131 BSPO:0000059 ! overlaps central side + +[Term] +id: BSPO:0000076 +name: contralateral region +comment: inherited from flybase cv. not clear how this would be used +xref: FBql:00005851 +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000060 ! overlaps contralateral side +relationship: RO:0002131 BSPO:0000060 ! overlaps contralateral side + +[Term] +id: BSPO:0000077 +name: proximal region +def: "Anatomical region proximally located on the body or body part." [BSPO:wd] +xref: FBql:00005852 +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000061 ! overlaps proximal side +relationship: RO:0002131 BSPO:0000061 ! overlaps proximal side + +[Term] +id: BSPO:0000078 +name: distal region +def: "Anatomical region distally located on the body or body part." [BSPO:wd] +xref: FBql:00005853 +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000062 ! overlaps distal side +relationship: RO:0002131 BSPO:0000062 ! overlaps distal side + +[Term] +id: BSPO:0000079 +name: dorsal region +def: "Anatomical region dorsally located on the body or body part." [BSPO:wd] +xref: FBql:00005842 +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000063 ! overlaps dorsal side +relationship: RO:0002131 BSPO:0000063 ! overlaps dorsal side + +[Term] +id: BSPO:0000080 +name: dorso-lateral region +def: "Anatomical region that overlaps the dorsal and lateral regions of a body or body part." [BSPO:wd] +synonym: "dorsolateral region" EXACT [] +xref: FBql:00005845 +is_a: BSPO:0000079 ! dorsal region +is_a: BSPO:0000082 ! lateral region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000063 ! overlaps dorsal side +intersection_of: RO:0002131 BSPO:0000066 ! overlaps lateral side +relationship: RO:0002131 BSPO:0000063 ! overlaps dorsal side +relationship: RO:0002131 BSPO:0000066 ! overlaps lateral side + +[Term] +id: BSPO:0000081 +name: ipsilateral region +xref: FBql:00005850 +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000065 ! overlaps ipsilateral side +relationship: RO:0002131 BSPO:0000065 ! overlaps ipsilateral side + +[Term] +id: BSPO:0000082 +name: lateral region +def: "Anatomical region laterally located on the body or body part." [BSPO:wd] +xref: FBql:00005844 +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000066 ! overlaps lateral side +relationship: RO:0002131 BSPO:0000066 ! overlaps lateral side + +[Term] +id: BSPO:0000083 +name: medial region +def: "Anatomical region medially located on the body or body part." [BSPO:wd] +xref: FBql:00005847 +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000067 ! overlaps medial side +relationship: RO:0002131 BSPO:0000067 ! overlaps medial side + +[Term] +id: BSPO:0000084 +name: ventral region +def: "Anatomical region ventrally located on the body or body part." [BSPO:wd] +xref: FBql:00005843 +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000068 ! overlaps ventral side +relationship: RO:0002131 BSPO:0000068 ! overlaps ventral side + +[Term] +id: BSPO:0000085 +name: ventro-lateral region +def: "Anatomical region that overlaps the ventral and lateral regions of a body or body part." [BSPO:wd] +comment: This is an example of a composition of two axis positions. +synonym: "ventrolateral region" EXACT [] +xref: FBql:00005846 +is_a: BSPO:0000082 ! lateral region +is_a: BSPO:0000084 ! ventral region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000066 ! overlaps lateral side +intersection_of: RO:0002131 BSPO:0000068 ! overlaps ventral side +relationship: RO:0002131 BSPO:0000066 ! overlaps lateral side +relationship: RO:0002131 BSPO:0000068 ! overlaps ventral side + +[Term] +id: BSPO:0000086 +name: anatomical compartment +comment: to be merged into CARO +xref: FBql:00005873 +xref: FMA:9647 +is_a: CARO:0000003 ! anatomical structure + +[Term] +id: BSPO:0000087 +name: anterior compartment +xref: FBcv:0000031 +xref: FBql:00005874 +is_a: BSPO:0000086 ! anatomical compartment + +[Term] +id: BSPO:0000088 +name: compartment boundary +xref: FBcv:0000032 +xref: FBql:00005878 +is_a: BSPO:0000086 ! anatomical compartment + +[Term] +id: BSPO:0000089 +name: dorsal compartment +xref: FBcv:0000035 +xref: FBql:00005876 +is_a: BSPO:0000086 ! anatomical compartment + +[Term] +id: BSPO:0000090 +name: posterior compartment +xref: FBcv:0000036 +xref: FBql:00005875 +is_a: BSPO:0000086 ! anatomical compartment + +[Term] +id: BSPO:0000091 +name: ventral compartment +xref: FBcv:0000037 +xref: FBql:00005877 +is_a: BSPO:0000086 ! anatomical compartment + +[Term] +id: BSPO:0000092 +name: anatomical compartment boundary +comment: to be merged into CARO +xref: FBql:00005881 +is_a: CARO:0000010 ! anatomical boundary + +[Term] +id: BSPO:0000093 +name: anterior/posterior compartment boundary +xref: FBcv:0000033 +xref: FBql:00005880 +is_a: BSPO:0000092 ! anatomical compartment boundary + +[Term] +id: BSPO:0000094 +name: dorsal/ventral compartment boundary +xref: FBcv:0000034 +xref: FBql:00005879 +is_a: BSPO:0000092 ! anatomical compartment boundary + +[Term] +id: BSPO:0000112 +name: ventro-medial region +def: "The region corresponding to the ventral region of the entity, towards the midline." [BSPO:wd] +synonym: "medioventral region" EXACT [] +synonym: "ventromedial region" EXACT [] +is_a: BSPO:0000083 ! medial region +is_a: BSPO:0000084 ! ventral region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000067 ! overlaps medial side +intersection_of: RO:0002131 BSPO:0000068 ! overlaps ventral side +relationship: RO:0002131 BSPO:0000067 ! overlaps medial side +relationship: RO:0002131 BSPO:0000068 ! overlaps ventral side +created_by: Melissa Haendel +creation_date: 2009-09-10T08:57:54Z + +[Term] +id: BSPO:0000127 +name: peripheral region +def: "Anatomical region peripherally located on the body or body part." [BSPO:wd] +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000129 ! overlaps peripheral side +relationship: RO:0002131 BSPO:0000129 ! overlaps peripheral side + +[Term] +id: BSPO:0000128 +name: axial region +is_a: BSPO:0000070 ! anatomical region +intersection_of: BSPO:0000070 ! anatomical region +intersection_of: RO:0002131 BSPO:0000130 ! overlaps axial side +relationship: RO:0002131 BSPO:0000130 ! overlaps axial side + +[Term] +id: BSPO:0000129 +name: peripheral side +is_a: BSPO:0000054 ! anatomical side + +[Term] +id: BSPO:0000130 +name: axial side +is_a: BSPO:0000054 ! anatomical side + +[Term] +id: BSPO:0000195 +name: adaxial-abaxial axis +def: "An anatomical axis that extends from the side of the anatomical entity that is closer to an axis (adaxial) to the side that is further from the same axis (abaxial)." [BSPO:RW] +synonym: "AA axis" EXACT [] +synonym: "dorsal-ventral axis" RELATED [] +is_a: BSPO:0000010 ! anatomical axis +created_by: wasila.dahdul +creation_date: 2013-07-02T11:20:29Z + +[Term] +id: BSPO:0000196 +name: medial-external axis +def: "An anatomical axis that extends from the center of the body outwards or externally." [BSPO:curators] +comment: The medial-external axis could apply to a sphere-shaped body. +synonym: "proximal-distal axis" RELATED [] +is_a: BSPO:0000010 ! anatomical axis +created_by: wasila.dahdul +creation_date: 2013-07-02T11:21:42Z + +[Term] +id: BSPO:0000197 +name: medial-radial axis +def: "An anatomical axis that is perpendicular to an apical/basal axis or proximal/distal axis and extends from the center of an axis (shoot axis or root in the case of plants) to any point on the exterior of the axis." [BSPO:curators] +comment: In plants, lateral growth (http://purl.obolibrary.org/obo/GO_0080190) run is along the medial/radial axis (from medial to radial) [RW]. Also applies to radially symmetrical animals such as sea urchins, cnidarians [PM] or applies to more-or-less cylindrical body parts in animals, like limbs. +synonym: "M-R axis" EXACT [] +synonym: "MR axis" EXACT [] +is_a: BSPO:0000196 ! medial-external axis +created_by: wasila.dahdul +creation_date: 2013-07-02T11:23:31Z + +[Term] +id: BSPO:0000198 +name: oral-aboral axis +def: "An axis that extends from the oral opening to the furthest point in an organism that is directly opposite." [BSPO:PM] +is_a: BSPO:0000010 ! anatomical axis +created_by: wasila.dahdul +creation_date: 2013-07-02T11:29:33Z + +[Term] +id: BSPO:0000199 +name: animal-vegetal axis +def: "An axis that extends from the animal end of an egg or early embryo to the opposite, vegetal end. In animals with yolk-bearing eggs, the vegetal end is the yolk bearing pole. (pertains to animals only - both vertebrate and invertebrate embryos)." [BSPO:PM] +synonym: "A-V axis" EXACT [] +synonym: "animal/vegetal axis" EXACT [] +synonym: "AV axis" EXACT [] +is_a: BSPO:0000010 ! anatomical axis +created_by: wasila.dahdul +creation_date: 2013-07-02T11:30:13Z + +[Term] +id: BSPO:0000200 +name: apical-basal axis relative to direction of growth +def: "An axis of a plant structure that is determined by the direction of apical growth, either by an apical meristem or an apical cell. Apical is toward the direction of apical growth: toward the tip of a growing shoot axis, root, thallus, or non-vascular leaf. Basal is away from the direction of apical growth: toward the root-shoot junction in the case of the primary root or stem, toward the primary root or stem for higher order roots or branches, toward the point of attachment for non-vascular leaves, and toward the original point of growth (as determined in the embryo) for thalli." [BSPO:RW] +comment: Plant structures that do not grow from an apical meristem, such as vascular leaves or petals, should be described using the proximal-distal axis. The proximal-distal axis may also be used for branches or lateral roots, and, in those cases, is concordant with the apical-basal axis. +is_a: BSPO:0000010 ! anatomical axis + +[Term] +id: BSPO:0000201 +name: tangential plane +def: "Anatomical plane that is perpendicular to a radial plane." [BSPO:wd] +comment: Need to add logical definitions. +is_a: BSPO:0000400 ! anatomical plane +created_by: wasila.dahdul +creation_date: 2014-01-22T15:34:31Z + +[Term] +id: BSPO:0000202 +name: radial plane +def: "Anatomical plane that follows the two dimensions specified by an apical-basal axis relative to direction of growth and a medial-lateral axis." [BSPO:wd] +comment: Need to add logical definitions. +is_a: BSPO:0000400 ! anatomical plane +created_by: wasila.dahdul +creation_date: 2014-01-22T15:34:02Z + +[Term] +id: BSPO:0000371 +name: anterior surface +def: "Anatomical surface that is located on the anterior side of the body or body part." [BSPO:wd] +xref: FBql:00005848 +is_a: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0015008 BSPO:0000055 ! surface_of anterior side +relationship: BSPO:0015008 BSPO:0000055 ! surface_of anterior side + +[Term] +id: BSPO:0000372 +name: posterior surface +def: "Anatomical surface that is located on the posterior side of the body or body part." [BSPO:wd] +xref: FBql:00005849 +is_a: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0015008 BSPO:0000056 ! surface_of posterior side +relationship: BSPO:0015008 BSPO:0000056 ! surface_of posterior side + +[Term] +id: BSPO:0000373 +name: apical surface +def: "Anatomical surface that is located on the apical side of the body or body part." [BSPO:wd] +xref: FBql:00005854 +is_a: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0015008 BSPO:0000057 ! surface_of apical side +relationship: BSPO:0015008 BSPO:0000057 ! surface_of apical side + +[Term] +id: BSPO:0000374 +name: basal surface +def: "Anatomical surface that is located on the basal side of the body or body part." [BSPO:wd] +xref: FBql:00005855 +is_a: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0015008 BSPO:0000058 ! surface_of basal side +relationship: BSPO:0015008 BSPO:0000058 ! surface_of basal side + +[Term] +id: BSPO:0000376 +name: contralateral surface +xref: FBql:00005851 +is_a: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0015008 BSPO:0000060 ! surface_of contralateral side +relationship: BSPO:0015008 BSPO:0000060 ! surface_of contralateral side + +[Term] +id: BSPO:0000377 +name: proximal surface +def: "Anatomical surface that is located on the proximal side of the body or body part." [BSPO:wd] +xref: FBql:00005852 +is_a: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0015008 BSPO:0000061 ! surface_of proximal side +relationship: BSPO:0015008 BSPO:0000061 ! surface_of proximal side + +[Term] +id: BSPO:0000378 +name: distal surface +def: "Anatomical surface that is located on the distal side of the body or body part." [BSPO:wd] +xref: FBql:00005853 +is_a: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0015008 BSPO:0000062 ! surface_of distal side +relationship: BSPO:0015008 BSPO:0000062 ! surface_of distal side + +[Term] +id: BSPO:0000379 +name: dorsal surface +def: "Anatomical surface that located on the dorsal side of the body or body part." [BSPO:wd] +xref: FBql:00005842 +is_a: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0015008 BSPO:0000063 ! surface_of dorsal side +relationship: BSPO:0015008 BSPO:0000063 ! surface_of dorsal side + +[Term] +id: BSPO:0000381 +name: ipsilateral surface +def: "Anatomical surface that is located on the same side of an organism or structure." [BSPO:wd] +xref: FBql:00005850 +is_a: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0015008 BSPO:0000065 ! surface_of ipsilateral side +relationship: BSPO:0015008 BSPO:0000065 ! surface_of ipsilateral side + +[Term] +id: BSPO:0000382 +name: lateral surface +def: "Anatomical surface that located on the lateral side of the body or body part." [BSPO:wd] +xref: FBql:00005844 +is_a: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0015008 BSPO:0000066 ! surface_of lateral side +relationship: BSPO:0015008 BSPO:0000066 ! surface_of lateral side + +[Term] +id: BSPO:0000383 +name: medial surface +def: "Anatomical surface that located on the medial side of the body or body part." [BSPO:wd] +xref: FBql:00005847 +is_a: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0015008 BSPO:0000067 ! surface_of medial side +relationship: BSPO:0015008 BSPO:0000067 ! surface_of medial side + +[Term] +id: BSPO:0000384 +name: ventral surface +def: "Anatomical surface that is located on the ventral side of the body or body part." [BSPO:wd] +xref: FBql:00005843 +is_a: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0000005 ! anatomical surface +intersection_of: BSPO:0015008 BSPO:0000068 ! surface_of ventral side +relationship: BSPO:0015008 BSPO:0000068 ! surface_of ventral side + +[Term] +id: BSPO:0000400 +name: anatomical plane +def: "A flat 2D plane intersecting an anatomical continuant, dividing it into two adjacent portions." [BSPO:cjm] +comment: These anatomical sections are applicable to most bilaterally symmetrical animals, but bipedal animals such as humans have more complex usage of these terms. For example, in post-embryonic humans a coronal plane is vertical and a transverse plane is horizontal, but for embryos and quadrupeds a coronal plane is horizontal and a transverse plane is vertical. +synonym: "anatomical cross-section" EXACT [] +synonym: "anatomical section" EXACT [] +synonym: "cross-section" RELATED [] +synonym: "plane" EXACT [] +synonym: "section" EXACT [] +xref: FMA:242982 +is_a: CARO:0000010 ! anatomical boundary + +[Term] +id: BSPO:0000417 +name: sagittal plane +def: "Anatomical plane that divides a bilateral body into left and right parts, not necessarily of even size." [BSPO:cjm, BSPO:DOS, BSPO:mah] +synonym: "left/right plane" EXACT [] +synonym: "median plane" EXACT [] +synonym: "sagittal section" EXACT [] +xref: FMA:11361 +is_a: BSPO:0000010 ! anatomical axis +is_a: BSPO:0000400 ! anatomical plane +intersection_of: BSPO:0000400 ! anatomical plane +intersection_of: BSPO:0015005 BSPO:0000017 ! orthogonal_to left-right axis +intersection_of: parallel_to BSPO:0000013 ! anterior-posterior axis +intersection_of: parallel_to BSPO:0000016 ! dorsal-ventral axis +relationship: BSPO:0015005 BSPO:0000017 ! orthogonal_to left-right axis +relationship: parallel_to BSPO:0000013 ! anterior-posterior axis +relationship: parallel_to BSPO:0000016 ! dorsal-ventral axis + +[Term] +id: BSPO:0000671 +name: anterior margin +def: "Anatomical margin that is located on the anterior side of a body or body part." [BSPO:wd] +is_a: BSPO:0000006 ! anatomical margin +is_a: BSPO:0000071 ! anterior region +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000055 ! overlaps anterior side +relationship: RO:0002131 BSPO:0000055 ! overlaps anterior side + +[Term] +id: BSPO:0000672 +name: posterior margin +def: "Anatomical margin that is located on the posterior side of the body or body part." [BSPO:wd] +is_a: BSPO:0000006 ! anatomical margin +is_a: BSPO:0000072 ! posterior region +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000056 ! overlaps posterior side +relationship: RO:0002131 BSPO:0000056 ! overlaps posterior side + +[Term] +id: BSPO:0000673 +name: apical margin +def: "Anatomical margin that is located on the apical side of the body or body part." [BSPO:wd] +is_a: BSPO:0000006 ! anatomical margin +is_a: BSPO:0000073 ! apical region +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000057 ! overlaps apical side +relationship: RO:0002131 BSPO:0000057 ! overlaps apical side + +[Term] +id: BSPO:0000674 +name: basal margin +def: "Anatomical margin that is located on the basal side of the body or body part." [BSPO:wd] +is_a: BSPO:0000006 ! anatomical margin +is_a: BSPO:0000074 ! basal region +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000058 ! overlaps basal side +relationship: RO:0002131 BSPO:0000058 ! overlaps basal side + +[Term] +id: BSPO:0000677 +name: proximal margin +def: "Anatomical margin that is located on the proximal region of the body or body part." [BSPO:wd] +is_a: BSPO:0000006 ! anatomical margin +is_a: BSPO:0000077 ! proximal region +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000061 ! overlaps proximal side +relationship: RO:0002131 BSPO:0000061 ! overlaps proximal side + +[Term] +id: BSPO:0000678 +name: distal margin +def: "Anatomical margin that is located on the distal side of the body or body part." [BSPO:wd] +is_a: BSPO:0000006 ! anatomical margin +is_a: BSPO:0000078 ! distal region +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000062 ! overlaps distal side +relationship: RO:0002131 BSPO:0000062 ! overlaps distal side + +[Term] +id: BSPO:0000679 +name: dorsal margin +def: "Anatomical margin that is located on the dorsal side of body or body part." [BSPO:wd] +is_a: BSPO:0000006 ! anatomical margin +is_a: BSPO:0000079 ! dorsal region +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000063 ! overlaps dorsal side +relationship: RO:0002131 BSPO:0000063 ! overlaps dorsal side + +[Term] +id: BSPO:0000680 +name: dorso-lateral margin +def: "Anatomical margin that is located on the dorso-lateral region of the body or body part." [BSPO:wd] +synonym: "dorsolateral margin" EXACT [] +is_a: BSPO:0000080 ! dorso-lateral region +is_a: BSPO:0000679 ! dorsal margin +is_a: BSPO:0000682 ! lateral margin +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000063 ! overlaps dorsal side +intersection_of: RO:0002131 BSPO:0000066 ! overlaps lateral side +relationship: RO:0002131 BSPO:0000063 ! overlaps dorsal side +relationship: RO:0002131 BSPO:0000066 ! overlaps lateral side + +[Term] +id: BSPO:0000682 +name: lateral margin +def: "Anatomical margin that is located on the lateral side of the body or body part." [BSPO:wd] +is_a: BSPO:0000006 ! anatomical margin +is_a: BSPO:0000082 ! lateral region +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000066 ! overlaps lateral side +relationship: RO:0002131 BSPO:0000066 ! overlaps lateral side + +[Term] +id: BSPO:0000683 +name: medial margin +def: "Anatomical margin that is located on the medial side of the body or body part." [BSPO:wd] +is_a: BSPO:0000006 ! anatomical margin +is_a: BSPO:0000083 ! medial region +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000067 ! overlaps medial side +relationship: RO:0002131 BSPO:0000067 ! overlaps medial side + +[Term] +id: BSPO:0000684 +name: ventral margin +def: "Anatomical margin that is located on the ventral side of the body or body part." [BSPO:wd] +is_a: BSPO:0000006 ! anatomical margin +is_a: BSPO:0000084 ! ventral region +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000068 ! overlaps ventral side +relationship: RO:0002131 BSPO:0000068 ! overlaps ventral side + +[Term] +id: BSPO:0000685 +name: ventro-lateral margin +def: "Anatomical margin that is located on the ventro-lateral region of the body or body part." [BSPO:wd] +comment: This is an example of a composition of two axis positions +synonym: "ventrolateral margin" EXACT [] +is_a: BSPO:0000085 ! ventro-lateral region +is_a: BSPO:0000682 ! lateral margin +is_a: BSPO:0000684 ! ventral margin +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000066 ! overlaps lateral side +intersection_of: RO:0002131 BSPO:0000068 ! overlaps ventral side +relationship: RO:0002131 BSPO:0000066 ! overlaps lateral side +relationship: RO:0002131 BSPO:0000068 ! overlaps ventral side + +[Term] +id: BSPO:0000686 +name: antero-dorsal margin +def: "Anatomical margin that is located on the antero-dorso region of the body or body part." [BSPO:wd] +synonym: "anterodorsal margin" EXACT [] +is_a: BSPO:0000026 ! antero-dorsal region +is_a: BSPO:0000671 ! anterior margin +is_a: BSPO:0000679 ! dorsal margin +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000055 ! overlaps anterior side +intersection_of: RO:0002131 BSPO:0000063 ! overlaps dorsal side +relationship: RO:0002131 BSPO:0000055 ! overlaps anterior side +relationship: RO:0002131 BSPO:0000063 ! overlaps dorsal side + +[Term] +id: BSPO:0000687 +name: postero-dorsal margin +def: "Anatomical margin that is located on the postero-dorsal region of the body or body part." [BSPO:wd] +synonym: "posterodorsal margin" EXACT [] +is_a: BSPO:0000030 ! postero-dorsal region +is_a: BSPO:0000672 ! posterior margin +is_a: BSPO:0000679 ! dorsal margin +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000056 ! overlaps posterior side +intersection_of: RO:0002131 BSPO:0000063 ! overlaps dorsal side +relationship: RO:0002131 BSPO:0000056 ! overlaps posterior side +relationship: RO:0002131 BSPO:0000063 ! overlaps dorsal side + +[Term] +id: BSPO:0000688 +name: antero-ventral margin +def: "Anatomical margin that is located on the antero-ventral region of the body or body part." [BSPO:wd] +synonym: "anteroventral margin" EXACT [] +is_a: BSPO:0000027 ! antero-ventral region +is_a: BSPO:0000671 ! anterior margin +is_a: BSPO:0000684 ! ventral margin +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000055 ! overlaps anterior side +intersection_of: RO:0002131 BSPO:0000068 ! overlaps ventral side +relationship: RO:0002131 BSPO:0000055 ! overlaps anterior side +relationship: RO:0002131 BSPO:0000068 ! overlaps ventral side + +[Term] +id: BSPO:0000689 +name: postero-ventral margin +def: "Anatomical margin that is located on the postero-ventral region of the body or body part." [BSPO:wd] +synonym: "posteroventral margin" EXACT [] +is_a: BSPO:0000035 ! postero-ventral region +is_a: BSPO:0000672 ! posterior margin +is_a: BSPO:0000684 ! ventral margin +intersection_of: BSPO:0000006 ! anatomical margin +intersection_of: RO:0002131 BSPO:0000056 ! overlaps posterior side +intersection_of: RO:0002131 BSPO:0000068 ! overlaps ventral side +relationship: RO:0002131 BSPO:0000056 ! overlaps posterior side +relationship: RO:0002131 BSPO:0000068 ! overlaps ventral side + +[Term] +id: BSPO:0001001 +name: medial-lateral axis +def: "An axis that extends from the center of organism to one or other side." [BSPO:cjm] +comment: Properly, the ML axis is a half axis; practically, its usage is less clumsy and less linguistically biased than "left-right". The terms may still be used relatively to describe locations along the LR axis. The gills are medial to the operculum, but lateral to the heart. +synonym: "M-L axis" EXACT [] +synonym: "medio-lateral axis" EXACT [] +synonym: "mediolateral axis" EXACT [] +synonym: "ML axis" EXACT [] +synonym: "proximal-distal axis " RELATED [] +xref: http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG +is_a: BSPO:0000196 ! medial-external axis + +[Term] +id: CARO:0000000 +name: anatomical entity +def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH] + +[Term] +id: CARO:0000003 +name: anatomical structure +def: "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." [CC:DOS] +is_a: CARO:0000006 ! material anatomical entity + +[Term] +id: CARO:0000006 +name: material anatomical entity +def: "An anatomical entity that has mass." [CC:DOS] +is_a: CARO:0000000 ! anatomical entity + +[Term] +id: CARO:0000007 +name: immaterial anatomical entity +def: "An anatomical entity that has no mass." [CC:DOS] +is_a: CARO:0000000 ! anatomical entity + +[Term] +id: CARO:0000008 +name: anatomical line +def: "A one dimensional, immaterial anatomical entity." [CC:DOS] +is_a: CARO:0000007 ! immaterial anatomical entity + +[Term] +id: CARO:0000010 +name: anatomical boundary +def: "A non-material anatomical entity of two dimensions. Anatomical boundaries are contiguous structures." [CC:DOS] +is_a: CARO:0000007 ! immaterial anatomical entity + +[Typedef] +id: :has_start_point +name: has_start_point +def: "A relation between an axis and a part of an organism, in which the part defines the initial point of the axis." [BSPO:cjm] +comment: Axes can be defined in a given species by subtyping the relevant axis type and stating a start and end point. +xref: \:has_start_point +domain: BSPO:0000010 ! anatomical axis +range: CARO:0000000 ! anatomical entity + +[Typedef] +id: BFO:0000050 +name: part_of +xref: BFO:0000050 +is_transitive: true + +[Typedef] +id: BFO:0000051 +name: has_part +xref: BFO:0000051 +is_transitive: true +inverse_of: BFO:0000050 ! part_of + +[Typedef] +id: BSPO:0000095 +name: anatomical_relation +xref: BSPO:0000095 +property_value: seeAlso FBql:00005860 +is_obsolete: true + +[Typedef] +id: BSPO:0000096 +name: anterior_to +def: "x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail." [BSPO:cjm] +synonym: "rostral_to" EXACT [] +xref: BSPO:0000096 +property_value: seeAlso FBcv:0000039 +property_value: seeAlso FBql:00005863 +is_transitive: true +inverse_of: BSPO:0000099 ! posterior_to + +[Typedef] +id: BSPO:0000097 +name: distal_to +def: "x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal)." [BSPO:cjm] +xref: BSPO:0000097 +property_value: seeAlso FBcv:0000040 +property_value: seeAlso FBql:00005867 +is_transitive: true +inverse_of: BSPO:0000100 ! proximal_to + +[Typedef] +id: BSPO:0000098 +name: dorsal_to +def: "x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly)." [BSPO:cjm] +xref: BSPO:0000098 +property_value: seeAlso FBcv:0000041 +property_value: seeAlso FBql:00005865 +is_transitive: true +inverse_of: BSPO:0000102 ! ventral_to + +[Typedef] +id: BSPO:0000099 +name: posterior_to +def: "x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail." [BSPO:cjm] +synonym: "caudal_to" NARROW vertebrate [] +xref: BSPO:0000099 +property_value: seeAlso FBcv:0000045 +property_value: seeAlso FBql:00005864 +is_transitive: true + +[Typedef] +id: BSPO:0000100 +name: proximal_to +def: "x proximal_to y iff x is closer to the point of attachment with the body than y." [BSPO:cjm] +comment: The elbow is proximal to the hand, but distal to the shoulder. +xref: BSPO:0000100 +property_value: seeAlso FBcv:0000047 +property_value: seeAlso FBql:00005868 +is_transitive: true + +[Typedef] +id: BSPO:0000101 +name: obsolete surrounds +xref: BSPO:0000101 +property_value: seeAlso FBcv:0000048 +property_value: seeAlso FBql:00005861 +is_obsolete: true +replaced_by: RO:0002221 + +[Typedef] +id: BSPO:0000102 +name: ventral_to +def: "x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly)." [BSPO:cjm] +xref: BSPO:0000102 +property_value: seeAlso FBcv:0000049 +property_value: seeAlso FBql:00005866 +is_transitive: true + +[Typedef] +id: BSPO:0000103 +name: vicinity_of +xref: BSPO:0000103 +property_value: seeAlso FBcv:0000050 +property_value: seeAlso FBql:00005862 + +[Typedef] +id: BSPO:0000104 +name: approximately_perpendicular_to +def: "Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole." [BSPO:cjm] +xref: BSPO:0000104 +domain: BSPO:0000010 ! anatomical axis +range: BSPO:0000010 ! anatomical axis + +[Typedef] +id: BSPO:0000105 +name: ipsilateral_to +def: "On the same side as. For example, the left arm is ipsilateral to the left leg." [BSPO:cjm] +xref: BSPO:0000105 +property_value: seeAlso FBql:00005850 +is_symmetric: true +is_a: BSPO:0000126 ! in_lateral_side_of +disjoint_from: BSPO:0000106 ! contralateral_to + +[Typedef] +id: BSPO:0000106 +name: contralateral_to +def: "On the opposite side from. For example, the left arm is contralateral to the right arm (and the right leg)." [BSPO:cjm] +xref: BSPO:0000106 +property_value: seeAlso FBql:00005851 +is_symmetric: true +is_a: BSPO:0000126 ! in_lateral_side_of + +[Typedef] +id: BSPO:0000107 +name: deep_to +def: "Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines." [BSPO:cjm] +xref: BSPO:0000107 +is_transitive: true +inverse_of: BSPO:0000108 ! superficial_to + +[Typedef] +id: BSPO:0000108 +name: superficial_to +def: "Near the outer surface of the organism. Thus, skin is superficial to the muscle layer." [BSPO:cjm] +xref: BSPO:0000108 +is_transitive: true + +[Typedef] +id: BSPO:0000109 +name: obsolete surrounded_by +xref: BSPO:0000109 +is_obsolete: true +replaced_by: RO:0002219 + +[Typedef] +id: BSPO:0000110 +name: left_of +def: "Closer to the left side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left_of Y <=> every instance x of X is left_of some instance y of Y, and there exists some organism o such that x part_of o and y part_of o." [BSPO:cjm] +xref: BSPO:0000110 +is_transitive: true +inverse_of: BSPO:0000111 ! right_of + +[Typedef] +id: BSPO:0000111 +name: right_of +def: "Closer to the right side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left_of Y <=> every instance x of X is right_of some instance y of Y, and there exists some organism o such that x part_of o and y part_of o." [BSPO:cjm] +xref: BSPO:0000111 +is_transitive: true + +[Typedef] +id: BSPO:0000113 +name: opposite_to +def: "Direcly opposite to. i.e. on the opposite side through the axis." [BSPO:cjm] +xref: BSPO:0000113 +is_a: BSPO:0000105 ! ipsilateral_to + +[Typedef] +id: BSPO:0000120 +name: in_left_side_of +def: "X in_left_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the left portion." [BSPO:PATO_mtg_2009] +xref: BSPO:0000120 +is_a: BSPO:0000126 ! in_lateral_side_of +inverse_of: BSPO:0000121 ! in_right_side_of + +[Typedef] +id: BSPO:0000121 +name: in_right_side_of +def: "X in_right_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the right portion." [BSPO:PATO_mtg_2009] +xref: BSPO:0000121 +is_a: BSPO:0000126 ! in_lateral_side_of + +[Typedef] +id: BSPO:0000122 +name: in_posterior_side_of +def: "X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion." [BSPO:PATO_mtg_2009] +xref: BSPO:0000122 +is_a: BFO:0000050 ! part_of + +[Typedef] +id: BSPO:0000123 +name: in_anterior_side_of +def: "X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion." [BSPO:PATO_mtg_2009] +xref: BSPO:0000123 +is_a: BFO:0000050 ! part_of + +[Typedef] +id: BSPO:0000124 +name: in_proximal_side_of +def: "x in_proximal_side_of y <=> if y is subdivided into two proximal and distal portions, y is part_of the proximal portion." [BSPO:PATO_mtg_2009] +xref: BSPO:0000124 +is_a: BFO:0000050 ! part_of + +[Typedef] +id: BSPO:0000125 +name: in_distal_side_of +def: "x in_distal_side_of y <=> if y is subdivided into two proximal and distal portions, y is part_of the distal portion." [BSPO:PATO_mtg_2009] +xref: BSPO:0000125 +is_a: BFO:0000050 ! part_of + +[Typedef] +id: BSPO:0000126 +name: in_lateral_side_of +def: "X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure" [UBERON:cjm] +xref: BSPO:0000126 +is_a: BFO:0000050 ! part_of + +[Typedef] +id: BSPO:0001100 +name: in_superficial_part_of +def: "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the superficial portion." [BSPO:cjm] +xref: BSPO:0001100 +is_a: BFO:0000050 ! part_of + +[Typedef] +id: BSPO:0001101 +name: in_deep_part_of +def: "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the deep portion." [BSPO:cjm] +xref: BSPO:0001101 +is_a: BFO:0000050 ! part_of + +[Typedef] +id: BSPO:0001106 +name: proximalmost_part_of +def: "X proximalmost_part_of Y <=> X is in_proximal_side_of Y and X is adjacent_to the proximal boundary of Y" [https://orcid.org/0000-0002-6601-2165] +xref: BSPO:0001106 +is_a: BSPO:0000124 ! in_proximal_side_of + +[Typedef] +id: BSPO:0001107 +name: immediately_deep_to +def: "x immediately_deep_to y iff x deep_to y and x is contiguous with y." [BSPO:curators] +xref: BSPO:0001107 +is_a: BSPO:0000107 ! deep_to +inverse_of: BSPO:0015014 ! immediately_superficial_to + +[Typedef] +id: BSPO:0001108 +name: distalmost_part_of +def: "X distalmost_part_of Y <=> X is in_distal_side_of Y and X is adjacent_to the distal boundary of Y" [https://orcid.org/0000-0002-6601-2165] +xref: BSPO:0001108 +is_a: BSPO:0000125 ! in_distal_side_of + +[Typedef] +id: BSPO:0001113 +name: preaxialmost_part_of +xref: BSPO:0001113 +is_a: BFO:0000050 ! part_of + +[Typedef] +id: BSPO:0001114 +name: postaxial_to +def: "x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the postaxial side." [http://medical-dictionary.thefreedictionary.com/postaxial] +synonym: "posterior_to (developmentally)" RELATED [MA:th] +xref: BSPO:0001114 +is_transitive: true + +[Typedef] +id: BSPO:0001115 +name: postaxialmost_part_of +xref: BSPO:0001115 +is_a: BFO:0000050 ! part_of + +[Typedef] +id: BSPO:0005001 +name: intersects_midsagittal_plane_of +def: "X intersects_median_plane of iff X crosses the midine plane of Y." [] +xref: BSPO:0005001 +is_a: BFO:0000050 ! part_of + +[Typedef] +id: BSPO:0015001 +name: finishes_axis +comment: A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. If s finishes_axis x, and x has_end_point p, then x overlaps p +xref: BSPO:0015001 +domain: BSPO:0000054 ! anatomical side +range: BSPO:0000010 ! anatomical axis + +[Typedef] +id: BSPO:0015002 +name: follows_axis +xref: BSPO:0015002 +range: BSPO:0000010 ! anatomical axis + +[Typedef] +id: BSPO:0015003 +name: has_axis +xref: BSPO:0015003 + +[Typedef] +id: BSPO:0015004 +name: has_end_point +def: "A relation between an axis and a part of an organism, in which the part defines the initial point of the axis." [BSPO:cjm] +comment: Axes can be defined in a given species by subtyping the relevant axis type and stating a end and end point +xref: BSPO:0015004 +domain: BSPO:0000010 ! anatomical axis +range: CARO:0000000 ! anatomical entity + +[Typedef] +id: BSPO:0015005 +name: orthogonal_to +def: "crossing at right angles" [BSPO:cjm] +xref: BSPO:0015005 +domain: BSPO:0000010 ! anatomical axis +range: BSPO:0000400 ! anatomical plane + +[Typedef] +id: BSPO:0015006 +name: passes_through +def: "Intersects at two points." [BSPO:cjm] +xref: BSPO:0015006 +domain: BSPO:0000010 ! anatomical axis + +[Typedef] +id: BSPO:0015007 +name: starts_axis +comment: A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. . If s starts_axis x, and x has_start_point p, then x overlaps p +xref: BSPO:0015007 +domain: BSPO:0000054 ! anatomical side +range: BSPO:0000010 ! anatomical axis + +[Typedef] +id: BSPO:0015008 +name: surface_of +comment: placeholder. used for relation between anatomical surface and an anatomical side. +xref: BSPO:0015008 +domain: BSPO:0000005 ! anatomical surface + +[Typedef] +id: BSPO:0015009 +name: immediately_anterior_to +def: "x immediately_anterior_to y iff x anterior_to y and x is contiguous with y." [BSPO:curators] +xref: BSPO:0015009 +is_a: BSPO:0000096 ! anterior_to +inverse_of: BSPO:0015012 ! immediately_posterior_to + +[Typedef] +id: BSPO:0015010 +name: immediately_distal_to +def: "x immediately_distal_to y iff x distal_to y and x is contiguous with y." [BSPO:curators] +xref: BSPO:0015010 +is_a: BSPO:0000097 ! distal_to +inverse_of: BSPO:0015013 ! immediately_proximal_to + +[Typedef] +id: BSPO:0015011 +name: immediately_dorsal_to +def: "x immediately_dorsal_to y iff x dorsal_to y and x is contiguous with y." [BSPO:curators] +xref: BSPO:0015011 +is_a: BSPO:0000098 ! dorsal_to +inverse_of: BSPO:0015015 ! immediately_ventral_to + +[Typedef] +id: BSPO:0015012 +name: immediately_posterior_to +def: "x immediately_posterior_to y iff x posterior_to y and x is contiguous with y." [BSPO:curators] +xref: BSPO:0015012 +is_a: BSPO:0000099 ! posterior_to + +[Typedef] +id: BSPO:0015013 +name: immediately_proximal_to +def: "x immediately_proximal_to y iff x proximal_to y and x is contiguous with y." [BSPO:curators] +xref: BSPO:0015013 +is_a: BSPO:0000100 ! proximal_to + +[Typedef] +id: BSPO:0015014 +name: immediately_superficial_to +def: "x immediately_superficial_to y iff x superficial_to y and x is contiguous with y." [BSPO:curators] +xref: BSPO:0015014 +is_a: BSPO:0000108 ! superficial_to + +[Typedef] +id: BSPO:0015015 +name: immediately_ventral_to +def: "x immediately_ventral_to y iff x ventral_to y and x is contiguous with y." [BSPO:curators] +xref: BSPO:0015015 +is_a: BSPO:0000102 ! ventral_to + +[Typedef] +id: BSPO:0015016 +name: immediately_left_of +def: "x immediately_left_of y iff x left_of y and x is contiguous with y." [BSPO:curators] +xref: BSPO:0015016 +is_a: BSPO:0000110 ! left_of +inverse_of: BSPO:0015017 ! immediately_right_of + +[Typedef] +id: BSPO:0015017 +name: immediately_right_of +def: "x immediately_right_of y iff x right_of y and x is contiguous with y." [BSPO:curators] +xref: BSPO:0015017 +is_a: BSPO:0000111 ! right_of + +[Typedef] +id: BSPO:1000000 +name: preaxial_to +def: "x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the front." [http://medical-dictionary.thefreedictionary.com/preaxial] +synonym: "anterior_to (developmentally)" RELATED [MA:th] +synonym: "lateral (radial) to" RELATED [] +synonym: "medial (tibial) to" RELATED [] +xref: BSPO:1000000 +is_transitive: true + +[Typedef] +id: RO:0002131 +name: overlaps +def: "x overlaps y iff they have some part in common." [BSPO:cjm] +comment: "(forall (x y) (iff (overlaps x y) (exists (z) (and (part_of z x) (part_of z y)))))" CLIF [] +xref: RO:0002131 + +[Typedef] +id: RO:0002220 +name: adjacent_to +xref: RO:0002220 +is_symmetric: true + +[Typedef] +id: parallel_to +name: parallel_to +def: "x is parallel t y iff x and y are lines or planes which when extended indefinitely do not cross." [BSPO:curators] + diff --git a/bspo.owl b/bspo.owl new file mode 100644 index 0000000..fd9c595 --- /dev/null +++ b/bspo.owl @@ -0,0 +1,5859 @@ + + + + * BSPO:$sequence(7,0,999999999)$ + 1.2 + 22:01:2014 15:38 + OBO-Edit 2.3-beta5 + based on FBql + spatial + wasila.dahdul + + + + + + + + + + + + + + definition + + + + + + + + term replaced by + + + + + + + + synonym typically used in the context of human anatomy + + + + + + + + + + + + + + + + synonym typically used in the context of vertebrate anatomy + + + + + + + + + + namespace-id-rule + + + + + + + + synonym_type_property + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + database_cross_reference + + + + + + + + has_exact_synonym + + + + + + + + has_narrow_synonym + + + + + + + + has_obo_format_version + + + + + + + + has_obo_namespace + + + + + + + + has_related_synonym + + + + + + + + has_scope + + + + + + + + has_synonym_type + + + + + + + + + + + + + + + + + + + + shorthand + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + part_of + BFO:0000050 + part_of + spatial + + + + + + + + + has_part + BFO:0000051 + has_part + spatial + + + + + + + + + anatomical_relation + BSPO:0000095 + anatomical_relation + spatial + true + + + + + + + + + + anterior_to + BSPO:0000096 + anterior_to + rostral_to + spatial + x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail. + + + + + + BSPO:cjm + x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail. + + + + + + + + + + + distal_to + BSPO:0000097 + distal_to + spatial + x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal). + + + + + + BSPO:cjm + x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal). + + + + + + + + + + + dorsal_to + BSPO:0000098 + dorsal_to + spatial + x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly). + + + + + + BSPO:cjm + x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly). + + + + + + + + + + + posterior_to + BSPO:0000099 + caudal_to + posterior_to + spatial + x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail. + + + + + caudal_to + + + + + + BSPO:cjm + x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail. + + + + + + + + + + + proximal_to + BSPO:0000100 + The elbow is proximal to the hand, but distal to the shoulder. + proximal_to + spatial + x proximal_to y iff x is closer to the point of attachment with the body than y. + + + + + BSPO:cjm + x proximal_to y iff x is closer to the point of attachment with the body than y. + + + + + + + + + + obsolete surrounds + BSPO:0000101 + RO:0002221 + obsolete_surrounds + spatial + true + + + + + + + + + + + ventral_to + BSPO:0000102 + spatial + ventral_to + x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly). + + + + + BSPO:cjm + x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly). + + + + + + + + + + vicinity_of + BSPO:0000103 + spatial + vicinity_of + + + + + + + + + + approximately_perpendicular_to + BSPO:0000104 + Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole. + approximately_perpendicular_to + spatial + + + + + BSPO:cjm + Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole. + + + + + + + + + + + ipsilateral_to + BSPO:0000105 + On the same side as. For example, the left arm is ipsilateral to the left leg. + ipsilateral_to + spatial + + + + + + BSPO:cjm + On the same side as. For example, the left arm is ipsilateral to the left leg. + + + + + + + + + + + contralateral_to + BSPO:0000106 + On the opposite side from. For example, the left arm is contralateral to the right arm (and the right leg). + contralateral_to + spatial + + + + + BSPO:cjm + On the opposite side from. For example, the left arm is contralateral to the right arm (and the right leg). + + + + + + + + + + + deep_to + BSPO:0000107 + Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines. + deep_to + spatial + + + + BSPO:cjm + Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines. + + + + + + + + + + + superficial_to + BSPO:0000108 + Near the outer surface of the organism. Thus, skin is superficial to the muscle layer. + spatial + superficial_to + + + BSPO:cjm + Near the outer surface of the organism. Thus, skin is superficial to the muscle layer. + + + + + + + + + + obsolete surrounded_by + BSPO:0000109 + RO:0002219 + obsolete_surrounded_by + spatial + true + + + + + + + + + left_of + BSPO:0000110 + Closer to the left side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left_of Y <=> every instance x of X is left_of some instance y of Y, and there exists some organism o such that x part_of o and y part_of o. + left_of + spatial + + + + BSPO:cjm + Closer to the left side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left_of Y <=> every instance x of X is left_of some instance y of Y, and there exists some organism o such that x part_of o and y part_of o. + + + + + + + + + + + right_of + BSPO:0000111 + Closer to the right side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left_of Y <=> every instance x of X is right_of some instance y of Y, and there exists some organism o such that x part_of o and y part_of o. + right_of + spatial + + + BSPO:cjm + Closer to the right side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left_of Y <=> every instance x of X is right_of some instance y of Y, and there exists some organism o such that x part_of o and y part_of o. + + + + + + + + + + opposite_to + BSPO:0000113 + Direcly opposite to. i.e. on the opposite side through the axis. + opposite_to + spatial + + + + BSPO:cjm + Direcly opposite to. i.e. on the opposite side through the axis. + + + + + + + + + + in_left_side_of + BSPO:0000120 + X in_left_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the left portion. + in_left_side_of + spatial + + + + + BSPO:PATO_mtg_2009 + X in_left_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the left portion. + + + + + + + + + + in_right_side_of + BSPO:0000121 + X in_right_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the right portion. + in_right_side_of + spatial + + + + BSPO:PATO_mtg_2009 + X in_right_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the right portion. + + + + + + + + + + in_posterior_side_of + BSPO:0000122 + X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion. + in_posterior_side_of + spatial + + + + BSPO:PATO_mtg_2009 + X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion. + + + + + + + + + + in_anterior_side_of + BSPO:0000123 + X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion. + in_anterior_side_of + spatial + + + + BSPO:PATO_mtg_2009 + X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion. + + + + + + + + + + in_proximal_side_of + BSPO:0000124 + in_proximal_side_of + spatial + x in_proximal_side_of y <=> if y is subdivided into two proximal and distal portions, y is part_of the proximal portion. + + + + BSPO:PATO_mtg_2009 + x in_proximal_side_of y <=> if y is subdivided into two proximal and distal portions, y is part_of the proximal portion. + + + + + + + + + + in_distal_side_of + BSPO:0000125 + in_distal_side_of + spatial + x in_distal_side_of y <=> if y is subdivided into two proximal and distal portions, y is part_of the distal portion. + + + + BSPO:PATO_mtg_2009 + x in_distal_side_of y <=> if y is subdivided into two proximal and distal portions, y is part_of the distal portion. + + + + + + + + + + in_lateral_side_of + BSPO:0000126 + X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure + in_lateral_side_of + spatial + + + + UBERON:cjm + X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure + + + + + + + + + + in_superficial_part_of + BSPO:0001100 + X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the superficial portion. + in_superficial_part_of + spatial + + + + BSPO:cjm + X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the superficial portion. + + + + + + + + + + in_deep_part_of + BSPO:0001101 + X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the deep portion. + in_deep_part_of + spatial + + + + BSPO:cjm + X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the deep portion. + + + + + + + + + + proximalmost_part_of + BSPO:0001106 + X proximalmost_part_of Y <=> X is in_proximal_side_of Y and X is adjacent_to the proximal boundary of Y + proximalmost_part_of + spatial + + + + X proximalmost_part_of Y <=> X is in_proximal_side_of Y and X is adjacent_to the proximal boundary of Y + https://orcid.org/0000-0002-6601-2165 + + + + + + + + + + immediately_deep_to + BSPO:0001107 + immediately_deep_to + spatial + x immediately_deep_to y iff x deep_to y and x is contiguous with y. + + + + + BSPO:curators + x immediately_deep_to y iff x deep_to y and x is contiguous with y. + + + + + + + + + + distalmost_part_of + BSPO:0001108 + X distalmost_part_of Y <=> X is in_distal_side_of Y and X is adjacent_to the distal boundary of Y + distalmost_part_of + spatial + + + + X distalmost_part_of Y <=> X is in_distal_side_of Y and X is adjacent_to the distal boundary of Y + https://orcid.org/0000-0002-6601-2165 + + + + + + + + + + preaxialmost_part_of + BSPO:0001113 + preaxialmost_part_of + spatial + + + + + + + + + + postaxial_to + BSPO:0001114 + postaxial_to + posterior_to (developmentally) + spatial + x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the postaxial side. + + + MA:th + posterior_to (developmentally) + + + + + http://medical-dictionary.thefreedictionary.com/postaxial + x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the postaxial side. + + + + + + + + + + postaxialmost_part_of + BSPO:0001115 + postaxialmost_part_of + spatial + + + + + + + + + intersects_midsagittal_plane_of + BSPO:0005001 + X intersects_median_plane of iff X crosses the midine plane of Y. + intersects_midsagittal_plane_of + spatial + + + + + + + + + finishes_axis + A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. If s finishes_axis x, and x has_end_point p, then x overlaps p + BSPO:0015001 + finishes_axis + spatial + + + + + + + + + + follows_axis + BSPO:0015002 + follows_axis + spatial + + + + + + + + + has_axis + BSPO:0015003 + has_axis + spatial + + + + + + + + has_end_point + A relation between an axis and a part of an organism, in which the part defines the initial point of the axis. + Axes can be defined in a given species by subtyping the relevant axis type and stating a end and end point + BSPO:0015004 + has_end_point + spatial + + + + + A relation between an axis and a part of an organism, in which the part defines the initial point of the axis. + BSPO:cjm + + + + + + + + + + orthogonal_to + BSPO:0015005 + crossing at right angles + orthogonal_to + spatial + + + + + BSPO:cjm + crossing at right angles + + + + + + + + + + passes_through + BSPO:0015006 + Intersects at two points. + passes_through + spatial + + + + BSPO:cjm + Intersects at two points. + + + + + + + + + + starts_axis + A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. . If s starts_axis x, and x has_start_point p, then x overlaps p + BSPO:0015007 + spatial + starts_axis + + + + + + + + + + surface_of + BSPO:0015008 + placeholder. used for relation between anatomical surface and an anatomical side. + spatial + surface_of + + + + + + + + + immediately_anterior_to + BSPO:0015009 + immediately_anterior_to + spatial + x immediately_anterior_to y iff x anterior_to y and x is contiguous with y. + + + + + BSPO:curators + x immediately_anterior_to y iff x anterior_to y and x is contiguous with y. + + + + + + + + + + immediately_distal_to + BSPO:0015010 + immediately_distal_to + spatial + x immediately_distal_to y iff x distal_to y and x is contiguous with y. + + + + + BSPO:curators + x immediately_distal_to y iff x distal_to y and x is contiguous with y. + + + + + + + + + + immediately_dorsal_to + BSPO:0015011 + immediately_dorsal_to + spatial + x immediately_dorsal_to y iff x dorsal_to y and x is contiguous with y. + + + + + BSPO:curators + x immediately_dorsal_to y iff x dorsal_to y and x is contiguous with y. + + + + + + + + + + immediately_posterior_to + BSPO:0015012 + immediately_posterior_to + spatial + x immediately_posterior_to y iff x posterior_to y and x is contiguous with y. + + + + BSPO:curators + x immediately_posterior_to y iff x posterior_to y and x is contiguous with y. + + + + + + + + + + immediately_proximal_to + BSPO:0015013 + immediately_proximal_to + spatial + x immediately_proximal_to y iff x proximal_to y and x is contiguous with y. + + + + BSPO:curators + x immediately_proximal_to y iff x proximal_to y and x is contiguous with y. + + + + + + + + + + immediately_superficial_to + BSPO:0015014 + immediately_superficial_to + spatial + x immediately_superficial_to y iff x superficial_to y and x is contiguous with y. + + + + BSPO:curators + x immediately_superficial_to y iff x superficial_to y and x is contiguous with y. + + + + + + + + + + immediately_ventral_to + BSPO:0015015 + immediately_ventral_to + spatial + x immediately_ventral_to y iff x ventral_to y and x is contiguous with y. + + + + BSPO:curators + x immediately_ventral_to y iff x ventral_to y and x is contiguous with y. + + + + + + + + + + immediately_left_of + BSPO:0015016 + immediately_left_of + spatial + x immediately_left_of y iff x left_of y and x is contiguous with y. + + + + + BSPO:curators + x immediately_left_of y iff x left_of y and x is contiguous with y. + + + + + + + + + + immediately_right_of + BSPO:0015017 + immediately_right_of + spatial + x immediately_right_of y iff x right_of y and x is contiguous with y. + + + + BSPO:curators + x immediately_right_of y iff x right_of y and x is contiguous with y. + + + + + + + + + + + preaxial_to + BSPO:1000000 + anterior_to (developmentally) + lateral (radial) to + medial (tibial) to + preaxial_to + spatial + x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the front. + + + MA:th + anterior_to (developmentally) + + + + + http://medical-dictionary.thefreedictionary.com/preaxial + x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the front. + + + + + + + + + + overlaps + "(forall (x y) (iff (overlaps x y) (exists (z) (and (part_of z x) (part_of z y)))))" CLIF [] + RO:0002131 + overlaps + spatial + x overlaps y iff they have some part in common. + + + BSPO:cjm + x overlaps y iff they have some part in common. + + + + + + + + + + + adjacent_to + RO:0002220 + adjacent_to + spatial + + + + + + + + has_start_point + :has_start_point + A relation between an axis and a part of an organism, in which the part defines the initial point of the axis. + Axes can be defined in a given species by subtyping the relevant axis type and stating a start and end point. + has_start_point + spatial + + + + + A relation between an axis and a part of an organism, in which the part defines the initial point of the axis. + BSPO:cjm + + + + + + + + + + parallel_to + parallel_to + spatial + x is parallel t y iff x and y are lines or planes which when extended indefinitely do not cross. + + + BSPO:curators + x is parallel t y iff x and y are lines or planes which when extended indefinitely do not cross. + + + + + + + + + + + + + + + left side + + + + + + + + + + + + + + BSPO:0000000 + The side of an organism that is left of the sagittal plane. + left + spatial + + + BSPO:cjm + The side of an organism that is left of the sagittal plane. + + + + + + + + + + upper side + + + + + + + + BSPO:0000001 + Consider merging with superior side. + spatial + upper + + + + + + + + lower side + + + + + + + + BSPO:0000002 + Consider merging with inferior side. + lower + spatial + + + + + + + + deep-superficial gradient (obsolete) + BSPO:00000021 + BSPO:0000021 + spatial + true + was made obsolete because the ID had too many digits + + + + + + + + deep side + + + + + + + + + + + + + + BSPO:0000003 + deep + spatial + + + + + + + + superficial side + + + + + + + + BSPO:0000004 + spatial + superficial + + + + + + + + anatomical surface + + A 2D surface of an anatomical continuant. + BSPO:0000005 + FMA:24137 + spatial + surface + to be merged into CARO + + + A 2D surface of an anatomical continuant. + BSPO:cjm + + + + + + + + + + anatomical margin + + BSPO:0000006 + Fiat anatomical region extending a short distance from the boundary of an object inwards. + edge + margin + spatial + + + BSPO:cjm + Fiat anatomical region extending a short distance from the boundary of an object inwards. + + + + + + + + + + right side + + + + + + + + BSPO:0000007 + The side of an organism that is right of the sagittal plane. + right + spatial + + + BSPO:cjm + BSPO:wd + The side of an organism that is right of the sagittal plane. + + + + + + + + + + parasagittal plane + + BSPO:0000008 + Sagittal plane that divides a bilateral body into unequal left and right parts. + parasagittal section + spatial + + + BSPO:mah + Sagittal plane that divides a bilateral body into unequal left and right parts. + + + + + + + + + + midsagittal plane + + BSPO:0000009 + FMA:74563 + Sagittal plane that divides bilateral body into equal left and right parts. + median plane + median sagittal plane + midline plane + midsagittal section + only in bilaterally symmetrical organisms + spatial + + + BSPO:mah + Sagittal plane that divides bilateral body into equal left and right parts. + + + + + FMA:74563 + median sagittal plane + + + + + + + + + + anatomical axis + + + + + + + + A straight line through space, intersecting an anatomical entity. + Axis directions are defined in terms of axes. + BSPO:0000010 + http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG + spatial + + + A straight line through space, intersecting an anatomical entity. + BSPO:cjm + + + + + + + + + + upper-lower axis + + An anatomical axis determined by gravity. + BSPO:0000011 + spatial + superior-inferior axis + + + An anatomical axis determined by gravity. + BSPO:cjm + + + + + + + + + + deep-superficial axis + + An axis that extends from an internal position to a more external position in the body or body part. + BSPO:0000012 + Muscles are frequently categorized as 'deep', 'intermediate', and 'superficial'. + spatial + + + An axis that extends from an internal position to a more external position in the body or body part. + BSPO:PM + + + + + + + + + + anterior-posterior axis + + + + + + + + + + + + + + + + + + + + + + + + + A-P axis + AP axis + An axis that extends through an organism from head end to opposite end of body or tail. + BSPO:0000013 + In sponges, AP is used to indicate the direction of movement [in larval stage] (as it is in other metazoans that move, e.g., the basal bilaterians). [PM] + anteroposterior axis + cephalocaudal axis + craniocaudal axis + longitudinal axis + rostral/caudal + rostrocaudal axis + spatial + + + cephalocaudal axis + http://en.wikipedia.org/wiki/Anatomical_terms_of_location + + + + + rostral/caudal + + + + + + An axis that extends through an organism from head end to opposite end of body or tail. + BSPO:cjm + + + + + craniocaudal axis + + + + + + rostrocaudal axis + + + + + + + + + + + apical-basal axis relative to substrate + + An axis that extends through an organism or organism part from the part of the organism or organism part attached to a substrate (basal) to the furthest from the attachment (apical). Note that the apical-basal axis is often used for organismal parts where there is attachment via a basal lamina or other structure. + BSPO:0000014 + apical/basal + longitudinal axis + spatial + + + An axis that extends through an organism or organism part from the part of the organism or organism part attached to a substrate (basal) to the furthest from the attachment (apical). Note that the apical-basal axis is often used for organismal parts where there is attachment via a basal lamina or other structure. + BSPO:mah + + + + + + + + + + proximal-distal axis + + An axis that extends from the point of attachment of a structure (proximal) to the point furthest away from the plane of attachment (distal). + BSPO:0000015 + In some communities, proximal and distal are used when specifying the position of parts of elements that are contained within the body, such as gill arches or vertebral spines. In these cases, use of the classes medial-lateral axis or medial-external axis are more appropriate. + proximal/distal + proximodistal + spatial + + + An axis that extends from the point of attachment of a structure (proximal) to the point furthest away from the plane of attachment (distal). + BSPO:curators + http://en.wikipedia.org/wiki/Anatomical_terms_of_location + + + + + + + + + + dorsal-ventral axis + + + + + + + + + + + + + + + + + + + An axis that is approximately perpendicular to the anterior-posterior axis and that extends through the horizontal plane of the body. + BSPO:0000016 + D-V axis + DV axis + anterior-posterior axis + dorsoventral axis + spatial + + + An axis that is approximately perpendicular to the anterior-posterior axis and that extends through the horizontal plane of the body. + BSPO:curators + + + + + anterior-posterior axis + + + + + + + + + + + left-right axis + + + + + + + + + + + + + + + + + + + An axis that bisects an organism from left to right sides of body, through a sagittal plane. + BSPO:0000017 + L-R axis + LR axis + R-L axis + RL axis + dextro-sinister axis + left to right axis + right to left axis + right-left axis + spatial + + + An axis that bisects an organism from left to right sides of body, through a sagittal plane. + BSPO:cjm + + + + + + + + + + transverse plane + + Anatomical plane that divides body into anterior and posterior parts. + BSPO:0000018 + FMA:12247 + axial plane + axial section + cross-section + spatial + transverse section + + + Anatomical plane that divides body into anterior and posterior parts. + BSPO:mah + + + + + + + + + + horizontal plane + + Anatomical plane that divides bilateral body into dorsal and ventral parts. + BSPO:0000019 + FMA:52810 + coronal section + frontal plane + frontal section + horizontal anatomical plane + horizontal section + spatial + + + Anatomical plane that divides bilateral body into dorsal and ventral parts. + BSPO:mah + + + + + FMA:52810 + horizontal anatomical plane + + + + + + + + + + upper-lower gradient + + + + + + + + + + + + + + + + + + + Anatomical gradient that is distributed along the upper-lower axis. + BSPO:0000020 + spatial + + + Anatomical gradient that is distributed along the upper-lower axis. + BSPO:wd + + + + + + + + + + deep-superficial gradient + + + + + + + + + + + + + + + + + + + Anatomical gradient that is distributed along the deep-superficial axis. + BSPO:0000021 + spatial + + + Anatomical gradient that is distributed along the deep-superficial axis. + BSPO:wd + + + + + + + + + + superior side + + BSPO:0000022 + The side that is higher relative to the substrate. + cranial + spatial + superior + + + BSPO:curators + The side that is higher relative to the substrate. + + + + + + + + + + apical-basal gradient + + + + + + + + + + + + + + + + + + + Anatomical gradient that is distributed along the apical-basal axis. + BSPO:0000023 + spatial + + + Anatomical gradient that is distributed along the apical-basal axis. + BSPO:wd + + + + + + + + + + proximal-distal gradient + + + + + + + + + + + + + + + + + + + Anatomical gradient that is distributed along the proximal-distal axis. + BSPO:0000024 + spatial + + + Anatomical gradient that is distributed along the proximal-distal axis. + BSPO:wd + + + + + + + + + + inferior side + + BSPO:0000025 + The side that is lower relative to the substrate. + caudal + inferior + spatial + + + BSPO:curators + The side that is lower relative to the substrate. + + + + + + + + + + antero-dorsal region + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-06-15T01:01:38Z + Anatomical region that overlaps the anterior and dorsal regions of a body or body part. + BSPO:0000026 + Melissa Haendel + anterodorsal region + spatial + + + Anatomical region that overlaps the anterior and dorsal regions of a body or body part. + BSPO:wd + + + + + + + + + + antero-ventral region + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-06-15T01:04:59Z + Anatomical region that overlaps the anterior and ventral regions of a body or body part. + BSPO:0000027 + Melissa Haendel + anteroventral region + spatial + + + Anatomical region that overlaps the anterior and ventral regions of a body or body part. + BSPO:wd + + + + + + + + + + postero-lateral region + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-06-15T01:06:01Z + Anatomical region that overlaps the posterior and lateral regions of the body or body part. + BSPO:0000028 + Melissa Haendel + posterolateral region + spatial + + + Anatomical region that overlaps the posterior and lateral regions of the body or body part. + BSPO:wd + + + + + + + + + + antero-lateral region + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-06-15T01:07:18Z + Anatomical region that overlaps the anterior and lateral regions of a body or body part. + BSPO:0000029 + Melissa Haendel + anterolateral region + spatial + + + Anatomical region that overlaps the anterior and lateral regions of a body or body part. + BSPO:wd + + + + + + + + + + postero-dorsal region + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-06-15T01:08:13Z + Anatomical region that overlaps the posterior and dorsal regions of the body or body part. + BSPO:0000030 + Melissa Haendel + posterodorsal region + spatial + + + Anatomical region that overlaps the posterior and dorsal regions of the body or body part. + BSPO:wd + + + + + + + + + + upper region + + + + + + + + + + + + + + + + + + + BSPO:0000031 + spatial + + + + + + + + lower region + + + + + + + + + + + + + + + + + + + BSPO:0000032 + spatial + + + + + + + + deep region + + + + + + + + + + + + + + + + + + + Anatomical region located deep within an organism or structure. + BSPO:0000033 + spatial + + + Anatomical region located deep within an organism or structure. + BSPO:wd + + + + + + + + + + superficial region + + + + + + + + + + + + + + + + + + + Anatomical region superficially located on the body or body part. + BSPO:0000034 + spatial + + + Anatomical region superficially located on the body or body part. + BSPO:wd + + + + + + + + + + postero-ventral region + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-06-15T01:08:38Z + Anatomical region that overlaps the posterior and ventral regions of a body or body part. + BSPO:0000035 + Melissa Haendel + posteroventral region + spatial + + + Anatomical region that overlaps the posterior and ventral regions of a body or body part. + BSPO:wd + + + + + + + + + + anterior-most region + + 2009-06-16T08:49:03Z + BSPO:0000036 + Melissa Haendel + anterior-most + anteriormost + spatial + + + + + + + + posterior-most region + + 2009-06-16T08:49:50Z + BSPO:0000037 + Melissa Haendel + posterior-most + posteriormost + spatial + + + + + + + + dorsal-most region + + 2009-06-16T08:50:26Z + BSPO:0000038 + Melissa Haendel + dorsal-most + dorsalmost + spatial + + + + + + + + ventral-most region + + 2009-06-16T08:51:07Z + BSPO:0000039 + Melissa Haendel + spatial + ventral-most + ventralmost + + + + + + + + upper/lower compartment boundary + + + + + + + + + + + + + + + + + + + BSPO:0000040 + spatial + + + + + + + + deep/superficial compartment boundary + + + + + + + + + + + + + + + + + + + BSPO:0000041 + spatial + + + + + + + + antero-medial margin + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-09-10T08:49:57Z + Anatomical margin that is located on the antero-medial region of the body or body part. + BSPO:0000042 + Melissa Haendel + anteromedial margin + spatial + + + Anatomical margin that is located on the antero-medial region of the body or body part. + BSPO:wd<new dbxref> + + + + + + + + + + apical/basal compartment boundary + + + + + + + + + + + + + + + + + + + BSPO:0000043 + spatial + + + + + + + + proximal/distal compartment boundary + + + + + + + + + + + + + + + + + + + BSPO:0000044 + spatial + + + + + + + + antero-lateral margin + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-09-10T08:50:37Z + Anatomical margin that is located on the antero-lateral region of the body or body part. + BSPO:0000045 + Melissa Haendel + anterolateral margin + spatial + + + Anatomical margin that is located on the antero-lateral region of the body or body part. + BSPO:wd + + + + + + + + + + postero-medial margin + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-09-10T08:51:07Z + Anatomical margin that is located on the postero-medial region of the body or body part. + BSPO:0000046 + Melissa Haendel + posteromedial margin + spatial + + + Anatomical margin that is located on the postero-medial region of the body or body part. + BSPO:wd + + + + + + + + + + postero-lateral margin + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-09-10T08:51:42Z + Anatomical margin that is located on the postero-lateral region of the body or body part. + BSPO:0000047 + Melissa Haendel + posterolateral margin + spatial + + + Anatomical margin that is located on the postero-lateral region of the body or body part. + BSPO:wd + + + + + + + + + + dorso-medial margin + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-09-10T08:52:04Z + Anatomical margin that is located on the dorso-medial region of the body or body part. + BSPO:0000048 + Melissa Haendel + dorso-medial margin + spatial + + + Anatomical margin that is located on the dorso-medial region of the body or body part. + BSPO:wd + + + + + + + + + + ventro-medial margin + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-09-10T08:52:48Z + Anatomical margin that is located on the ventro-medial region of the body or body part. + BSPO:0000049 + Melissa Haendel + spatial + ventromedial margin + + + Anatomical margin that is located on the ventro-medial region of the body or body part. + BSPO:wd + + + + + + + + + + antero-medial region + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-09-10T08:55:32Z + Anatomical region that overlaps the anterior and medial regions of the body or body part. + BSPO:0000050 + Melissa Haendel + anteromedial region + spatial + + + Anatomical region that overlaps the anterior and medial regions of the body or body part. + BSPO:wd + + + + + + + + + + anatomical gradient + + BSPO:0000051 + FBql:00005254 + Material anatomical entity defined by change in the value of some quantity per unit of distance across some spatial axis. + spatial + + + BSPO:cjm + Material anatomical entity defined by change in the value of some quantity per unit of distance across some spatial axis. + + + + + + + + + + anterior-posterior gradient + + + + + + + + + + + + + + + + + + + Anatomical gradient that is distributed along the anterior-posterior axis. + BSPO:0000052 + FBcv:0000142 + FBql:00005256 + spatial + + + Anatomical gradient that is distributed along the anterior-posterior axis. + BSPO:wd + + + + + + + + + + dorsal-ventral gradient + + + + + + + + + + + + + + + + + + + Anatomical gradient that is distributed along the dorsal-ventral axis. + BSPO:0000053 + FBcv:0000143 + FBql:00005255 + spatial + + + Anatomical gradient that is distributed along the dorsal-ventral axis. + BSPO:wd + + + + + + + + + + anatomical side + + An anatomical region bounded by a plane perpendicular to an axis through the middle. + BSPO:0000054 + FBql:00005841 + spatial + + + An anatomical region bounded by a plane perpendicular to an axis through the middle. + BSPO:cjm + + + + + + + + + + anterior side + + + + + + + + + + + + + + + + + + + + An anatomical region that is the entire part of an anatomical structure anterior to a transverse plane and bounded on one side by the same transverse plane. + BSPO:0000055 + FBcv:0000053 + FBql:00005848 + anterior + rostral + spatial + + + An anatomical region that is the entire part of an anatomical structure anterior to a transverse plane and bounded on one side by the same transverse plane. + BSPO:RW + + + + + + + + + + posterior side + + + + + + + + + + + + + + An anatomical region that is the entire part of an anatomical structure posterior to a transverse plane and bounded on one side by the same transverse plane. + BSPO:0000056 + FBcv:0000065 + FBql:00005849 + caudal + posterior + spatial + + + An anatomical region that is the entire part of an anatomical structure posterior to a transverse plane and bounded on one side by the same transverse plane. + BSPO:RW + BSPO:wd + + + + + caudal + + + + + + + + + + + apical side + + + + + + + + + + + + + + Anatomical side that is located on the apical end of an organism or structure. + BSPO:0000057 + FBcv:0000054 + FBql:00005854 + apical + spatial + + + Anatomical side that is located on the apical end of an organism or structure. + BSPO:wd + + + + + + + + + + basal side + + + + + + + + Anatomical side that is located on the basal end of an organism or structure. + BSPO:0000058 + FBcv:0000055 + FBql:00005855 + The part of the organism attached to a substrate. Axis of symmetry. + basal + spatial + + + Anatomical side that is located on the basal end of an organism or structure. + BSPO:wd + + + + + + + + + + central side + + Anatomical side that is centrally located on an organism or structure. + BSPO:0000059 + FBcv:0000056 + FBql:00015851 + central + central is not an axis direction + spatial + + + Anatomical side that is centrally located on an organism or structure. + BSPO:wd + + + + + + + + + + contralateral side + + BSPO:0000060 + FBcv:0000057 + FBql:00005851 + On the opposite side. + contralateral + inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation. + spatial + + + BSPO:cjm + On the opposite side. + + + + + + + + + + proximal side + + + + + + + + + + + + + + BSPO:0000061 + FBcv:0000066 + FBql:00005852 + proximal + spatial + + + + + + + + distal side + + + + + + + + + + + + + + Anatomical side that is distally located on an organism or structure. + BSPO:0000062 + FBcv:0000058 + FBql:00005853 + distal + spatial + + + Anatomical side that is distally located on an organism or structure. + BSPO:wd + + + + + + + + + + dorsal side + + + + + + + + + + + + + + + + + + + + An anatomical region that is the entire part of an anatomical structure dorsal to a horizontal plane and bounded on one side by the same transverse plane. + BSPO:0000063 + FBcv:0000059 + FBql:00005842 + dorsal + spatial + + + An anatomical region that is the entire part of an anatomical structure dorsal to a horizontal plane and bounded on one side by the same transverse plane. + BSPO:wd + + + + + + + + + + postero-medial region + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-09-10T08:56:39Z + Anatomical region that overlaps the posterior and medial regions of the body or body part. + BSPO:0000064 + Melissa Haendel + posteromedial region + spatial + + + Anatomical region that overlaps the posterior and medial regions of the body or body part. + BSPO:wd + + + + + + + + + + ipsilateral side + + BSPO:0000065 + FBcv:0000062 + FBql:00005850 + On the same side + inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation. + ipsilateral + spatial + + + BSPO:cjm + On the same side + + + + + + + + + + lateral side + + BSPO:0000066 + FBcv:0000063 + FBql:00005844 + lateral + spatial + + + + + + + + medial side + + BSPO:0000067 + FBcv:0000064 + FBql:00005847 + a point in the centre of the organism (where the left-right axis intersects the midsagittal plane) + medial + spatial + + + + + + + + ventral side + + + + + + + + An anatomical region that is the entire part of an anatomical structure ventral to a horizontal plane and bounded on one side by the same horizontal plane. + BSPO:0000068 + FBcv:0000070 + FBql:00005843 + spatial + ventral + + + An anatomical region that is the entire part of an anatomical structure ventral to a horizontal plane and bounded on one side by the same horizontal plane. + BSPO:RW + BSPO:wd + + + + + + + + + + dorso-medial region + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-09-10T08:57:22Z + Anatomical region that overlaps the dorsal and medial regions of the body or body part. + BSPO:0000069 + Melissa Haendel + dorsomedial region + spatial + + + Anatomical region that overlaps the dorsal and medial regions of the body or body part. + BSPO:wd + + + + + + + + + + anatomical region + + A 3D region in space without well-defined compartmental boundaries; for example, the dorsal region of an ectoderm. + BSPO:0000070 + FBql:00005841 + spatial + to be merged into CARO + + + A 3D region in space without well-defined compartmental boundaries; for example, the dorsal region of an ectoderm. + BSPO:cjm + + + + + + + + + + anterior region + + + + + + + + + + + + + + + + + + + Anatomical region anteriorly located on the body or body part. + BSPO:0000071 + FBql:00005848 + spatial + + + Anatomical region anteriorly located on the body or body part. + BSPO:wd + + + + + + + + + + posterior region + + + + + + + + + + + + + + + + + + + Anatomical region posteriorly located on the body or body part. + BSPO:0000072 + FBql:00005849 + spatial + + + Anatomical region posteriorly located on the body or body part. + BSPO:wd + + + + + + + + + + apical region + + + + + + + + + + + + + + + + + + + Anatomical region located on the apical end on the body or body part. + BSPO:0000073 + FBql:00005854 + spatial + + + Anatomical region located on the apical end on the body or body part. + BSPO:wd + + + + + + + + + + basal region + + + + + + + + + + + + + + + + + + + Anatomical region located basally on the body or body part. + BSPO:0000074 + FBql:00005855 + spatial + + + Anatomical region located basally on the body or body part. + BSPO:wd + + + + + + + + + + central region + + + + + + + + + + + + + + + + + + + Anatomical region centrally located on the body or body part. + BSPO:0000075 + FBql:00015851 + spatial + + + Anatomical region centrally located on the body or body part. + BSPO:wd + + + + + + + + + + contralateral region + + + + + + + + + + + + + + + + + + + BSPO:0000076 + FBql:00005851 + inherited from flybase cv. not clear how this would be used + spatial + + + + + + + + proximal region + + + + + + + + + + + + + + + + + + + Anatomical region proximally located on the body or body part. + BSPO:0000077 + FBql:00005852 + spatial + + + Anatomical region proximally located on the body or body part. + BSPO:wd + + + + + + + + + + distal region + + + + + + + + + + + + + + + + + + + Anatomical region distally located on the body or body part. + BSPO:0000078 + FBql:00005853 + spatial + + + Anatomical region distally located on the body or body part. + BSPO:wd + + + + + + + + + + dorsal region + + + + + + + + + + + + + + + + + + + Anatomical region dorsally located on the body or body part. + BSPO:0000079 + FBql:00005842 + spatial + + + Anatomical region dorsally located on the body or body part. + BSPO:wd + + + + + + + + + + dorso-lateral region + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Anatomical region that overlaps the dorsal and lateral regions of a body or body part. + BSPO:0000080 + FBql:00005845 + dorsolateral region + spatial + + + Anatomical region that overlaps the dorsal and lateral regions of a body or body part. + BSPO:wd + + + + + + + + + + ipsilateral region + + + + + + + + + + + + + + + + + + + BSPO:0000081 + FBql:00005850 + spatial + + + + + + + + lateral region + + + + + + + + + + + + + + + + + + + Anatomical region laterally located on the body or body part. + BSPO:0000082 + FBql:00005844 + spatial + + + Anatomical region laterally located on the body or body part. + BSPO:wd + + + + + + + + + + medial region + + + + + + + + + + + + + + + + + + + Anatomical region medially located on the body or body part. + BSPO:0000083 + FBql:00005847 + spatial + + + Anatomical region medially located on the body or body part. + BSPO:wd + + + + + + + + + + ventral region + + + + + + + + + + + + + + + + + + + Anatomical region ventrally located on the body or body part. + BSPO:0000084 + FBql:00005843 + spatial + + + Anatomical region ventrally located on the body or body part. + BSPO:wd + + + + + + + + + + ventro-lateral region + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Anatomical region that overlaps the ventral and lateral regions of a body or body part. + BSPO:0000085 + FBql:00005846 + This is an example of a composition of two axis positions. + spatial + ventrolateral region + + + Anatomical region that overlaps the ventral and lateral regions of a body or body part. + BSPO:wd + + + + + + + + + + anatomical compartment + + BSPO:0000086 + FBql:00005873 + FMA:9647 + spatial + to be merged into CARO + + + + + + + + anterior compartment + + BSPO:0000087 + FBcv:0000031 + FBql:00005874 + spatial + + + + + + + + compartment boundary + + BSPO:0000088 + FBcv:0000032 + FBql:00005878 + spatial + + + + + + + + dorsal compartment + + BSPO:0000089 + FBcv:0000035 + FBql:00005876 + spatial + + + + + + + + posterior compartment + + BSPO:0000090 + FBcv:0000036 + FBql:00005875 + spatial + + + + + + + + ventral compartment + + BSPO:0000091 + FBcv:0000037 + FBql:00005877 + spatial + + + + + + + + anatomical compartment boundary + + BSPO:0000092 + FBql:00005881 + spatial + to be merged into CARO + + + + + + + + anterior/posterior compartment boundary + + BSPO:0000093 + FBcv:0000033 + FBql:00005880 + spatial + + + + + + + + dorsal/ventral compartment boundary + + BSPO:0000094 + FBcv:0000034 + FBql:00005879 + spatial + + + + + + + + ventro-medial region + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 2009-09-10T08:57:54Z + BSPO:0000112 + Melissa Haendel + The region corresponding to the ventral region of the entity, towards the midline. + medioventral region + spatial + ventromedial region + + + BSPO:wd + The region corresponding to the ventral region of the entity, towards the midline. + + + + + + + + + + peripheral region + + + + + + + + + + + + + + + + + + + Anatomical region peripherally located on the body or body part. + BSPO:0000127 + spatial + + + Anatomical region peripherally located on the body or body part. + BSPO:wd + + + + + + + + + + axial region + + + + + + + + + + + + + + + + + + + BSPO:0000128 + spatial + + + + + + + + peripheral side + + BSPO:0000129 + spatial + + + + + + + + axial side + + BSPO:0000130 + spatial + + + + + + + + adaxial-abaxial axis + + 2013-07-02T11:20:29Z + AA axis + An anatomical axis that extends from the side of the anatomical entity that is closer to an axis (adaxial) to the side that is further from the same axis (abaxial). + BSPO:0000195 + dorsal-ventral axis + spatial + wasila.dahdul + + + An anatomical axis that extends from the side of the anatomical entity that is closer to an axis (adaxial) to the side that is further from the same axis (abaxial). + BSPO:RW + + + + + + + + + + medial-external axis + + 2013-07-02T11:21:42Z + An anatomical axis that extends from the center of the body outwards or externally. + BSPO:0000196 + The medial-external axis could apply to a sphere-shaped body. + proximal-distal axis + spatial + wasila.dahdul + + + An anatomical axis that extends from the center of the body outwards or externally. + BSPO:curators + + + + + + + + + + medial-radial axis + + 2013-07-02T11:23:31Z + An anatomical axis that is perpendicular to an apical/basal axis or proximal/distal axis and extends from the center of an axis (shoot axis or root in the case of plants) to any point on the exterior of the axis. + BSPO:0000197 + In plants, lateral growth (http://purl.obolibrary.org/obo/GO_0080190) run is along the medial/radial axis (from medial to radial) [RW]. Also applies to radially symmetrical animals such as sea urchins, cnidarians [PM] or applies to more-or-less cylindrical body parts in animals, like limbs. + M-R axis + MR axis + spatial + wasila.dahdul + + + An anatomical axis that is perpendicular to an apical/basal axis or proximal/distal axis and extends from the center of an axis (shoot axis or root in the case of plants) to any point on the exterior of the axis. + BSPO:curators + + + + + + + + + + oral-aboral axis + + 2013-07-02T11:29:33Z + An axis that extends from the oral opening to the furthest point in an organism that is directly opposite. + BSPO:0000198 + spatial + wasila.dahdul + + + An axis that extends from the oral opening to the furthest point in an organism that is directly opposite. + BSPO:PM + + + + + + + + + + animal-vegetal axis + + 2013-07-02T11:30:13Z + A-V axis + AV axis + An axis that extends from the animal end of an egg or early embryo to the opposite, vegetal end. In animals with yolk-bearing eggs, the vegetal end is the yolk bearing pole. (pertains to animals only - both vertebrate and invertebrate embryos). + BSPO:0000199 + animal/vegetal axis + spatial + wasila.dahdul + + + An axis that extends from the animal end of an egg or early embryo to the opposite, vegetal end. In animals with yolk-bearing eggs, the vegetal end is the yolk bearing pole. (pertains to animals only - both vertebrate and invertebrate embryos). + BSPO:PM + + + + + + + + + + apical-basal axis relative to direction of growth + + An axis of a plant structure that is determined by the direction of apical growth, either by an apical meristem or an apical cell. Apical is toward the direction of apical growth: toward the tip of a growing shoot axis, root, thallus, or non-vascular leaf. Basal is away from the direction of apical growth: toward the root-shoot junction in the case of the primary root or stem, toward the primary root or stem for higher order roots or branches, toward the point of attachment for non-vascular leaves, and toward the original point of growth (as determined in the embryo) for thalli. + BSPO:0000200 + Plant structures that do not grow from an apical meristem, such as vascular leaves or petals, should be described using the proximal-distal axis. The proximal-distal axis may also be used for branches or lateral roots, and, in those cases, is concordant with the apical-basal axis. + spatial + + + An axis of a plant structure that is determined by the direction of apical growth, either by an apical meristem or an apical cell. Apical is toward the direction of apical growth: toward the tip of a growing shoot axis, root, thallus, or non-vascular leaf. Basal is away from the direction of apical growth: toward the root-shoot junction in the case of the primary root or stem, toward the primary root or stem for higher order roots or branches, toward the point of attachment for non-vascular leaves, and toward the original point of growth (as determined in the embryo) for thalli. + BSPO:RW + + + + + + + + + + tangential plane + + 2014-01-22T15:34:31Z + Anatomical plane that is perpendicular to a radial plane. + BSPO:0000201 + Need to add logical definitions. + spatial + wasila.dahdul + + + Anatomical plane that is perpendicular to a radial plane. + BSPO:wd + + + + + + + + + + radial plane + + 2014-01-22T15:34:02Z + Anatomical plane that follows the two dimensions specified by an apical-basal axis relative to direction of growth and a medial-lateral axis. + BSPO:0000202 + Need to add logical definitions. + spatial + wasila.dahdul + + + Anatomical plane that follows the two dimensions specified by an apical-basal axis relative to direction of growth and a medial-lateral axis. + BSPO:wd + + + + + + + + + + anterior surface + + + + + + + + + + + + + + + + + + + Anatomical surface that is located on the anterior side of the body or body part. + BSPO:0000371 + FBql:00005848 + spatial + + + Anatomical surface that is located on the anterior side of the body or body part. + BSPO:wd + + + + + + + + + + posterior surface + + + + + + + + + + + + + + + + + + + Anatomical surface that is located on the posterior side of the body or body part. + BSPO:0000372 + FBql:00005849 + spatial + + + Anatomical surface that is located on the posterior side of the body or body part. + BSPO:wd + + + + + + + + + + apical surface + + + + + + + + + + + + + + + + + + + Anatomical surface that is located on the apical side of the body or body part. + BSPO:0000373 + FBql:00005854 + spatial + + + Anatomical surface that is located on the apical side of the body or body part. + BSPO:wd + + + + + + + + + + basal surface + + + + + + + + + + + + + + + + + + + Anatomical surface that is located on the basal side of the body or body part. + BSPO:0000374 + FBql:00005855 + spatial + + + Anatomical surface that is located on the basal side of the body or body part. + BSPO:wd + + + + + + + + + + contralateral surface + + + + + + + + + + + + + + + + + + + BSPO:0000376 + FBql:00005851 + spatial + + + + + + + + proximal surface + + + + + + + + + + + + + + + + + + + Anatomical surface that is located on the proximal side of the body or body part. + BSPO:0000377 + FBql:00005852 + spatial + + + Anatomical surface that is located on the proximal side of the body or body part. + BSPO:wd + + + + + + + + + + distal surface + + + + + + + + + + + + + + + + + + + Anatomical surface that is located on the distal side of the body or body part. + BSPO:0000378 + FBql:00005853 + spatial + + + Anatomical surface that is located on the distal side of the body or body part. + BSPO:wd + + + + + + + + + + dorsal surface + + + + + + + + + + + + + + + + + + + Anatomical surface that located on the dorsal side of the body or body part. + BSPO:0000379 + FBql:00005842 + spatial + + + Anatomical surface that located on the dorsal side of the body or body part. + BSPO:wd + + + + + + + + + + ipsilateral surface + + + + + + + + + + + + + + + + + + + Anatomical surface that is located on the same side of an organism or structure. + BSPO:0000381 + FBql:00005850 + spatial + + + Anatomical surface that is located on the same side of an organism or structure. + BSPO:wd + + + + + + + + + + lateral surface + + + + + + + + + + + + + + + + + + + Anatomical surface that located on the lateral side of the body or body part. + BSPO:0000382 + FBql:00005844 + spatial + + + Anatomical surface that located on the lateral side of the body or body part. + BSPO:wd + + + + + + + + + + medial surface + + + + + + + + + + + + + + + + + + + Anatomical surface that located on the medial side of the body or body part. + BSPO:0000383 + FBql:00005847 + spatial + + + Anatomical surface that located on the medial side of the body or body part. + BSPO:wd + + + + + + + + + + ventral surface + + + + + + + + + + + + + + + + + + + Anatomical surface that is located on the ventral side of the body or body part. + BSPO:0000384 + FBql:00005843 + spatial + + + Anatomical surface that is located on the ventral side of the body or body part. + BSPO:wd + + + + + + + + + + anatomical plane + + A flat 2D plane intersecting an anatomical continuant, dividing it into two adjacent portions. + BSPO:0000400 + FMA:242982 + These anatomical sections are applicable to most bilaterally symmetrical animals, but bipedal animals such as humans have more complex usage of these terms. For example, in post-embryonic humans a coronal plane is vertical and a transverse plane is horizontal, but for embryos and quadrupeds a coronal plane is horizontal and a transverse plane is vertical. + anatomical cross-section + anatomical section + cross-section + plane + section + spatial + + + A flat 2D plane intersecting an anatomical continuant, dividing it into two adjacent portions. + BSPO:cjm + + + + + + + + + + sagittal plane + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Anatomical plane that divides a bilateral body into left and right parts, not necessarily of even size. + BSPO:0000417 + FMA:11361 + left/right plane + median plane + sagittal section + spatial + + + Anatomical plane that divides a bilateral body into left and right parts, not necessarily of even size. + BSPO:DOS + BSPO:cjm + BSPO:mah + + + + + + + + + + anterior margin + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the anterior side of a body or body part. + BSPO:0000671 + spatial + + + Anatomical margin that is located on the anterior side of a body or body part. + BSPO:wd + + + + + + + + + + posterior margin + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the posterior side of the body or body part. + BSPO:0000672 + spatial + + + Anatomical margin that is located on the posterior side of the body or body part. + BSPO:wd + + + + + + + + + + apical margin + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the apical side of the body or body part. + BSPO:0000673 + spatial + + + Anatomical margin that is located on the apical side of the body or body part. + BSPO:wd + + + + + + + + + + basal margin + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the basal side of the body or body part. + BSPO:0000674 + spatial + + + Anatomical margin that is located on the basal side of the body or body part. + BSPO:wd + + + + + + + + + + proximal margin + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the proximal region of the body or body part. + BSPO:0000677 + spatial + + + Anatomical margin that is located on the proximal region of the body or body part. + BSPO:wd + + + + + + + + + + distal margin + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the distal side of the body or body part. + BSPO:0000678 + spatial + + + Anatomical margin that is located on the distal side of the body or body part. + BSPO:wd + + + + + + + + + + dorsal margin + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the dorsal side of body or body part. + BSPO:0000679 + spatial + + + Anatomical margin that is located on the dorsal side of body or body part. + BSPO:wd + + + + + + + + + + dorso-lateral margin + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the dorso-lateral region of the body or body part. + BSPO:0000680 + dorsolateral margin + spatial + + + Anatomical margin that is located on the dorso-lateral region of the body or body part. + BSPO:wd + + + + + + + + + + lateral margin + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the lateral side of the body or body part. + BSPO:0000682 + spatial + + + Anatomical margin that is located on the lateral side of the body or body part. + BSPO:wd + + + + + + + + + + medial margin + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the medial side of the body or body part. + BSPO:0000683 + spatial + + + Anatomical margin that is located on the medial side of the body or body part. + BSPO:wd + + + + + + + + + + ventral margin + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the ventral side of the body or body part. + BSPO:0000684 + spatial + + + Anatomical margin that is located on the ventral side of the body or body part. + BSPO:wd + + + + + + + + + + ventro-lateral margin + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the ventro-lateral region of the body or body part. + BSPO:0000685 + This is an example of a composition of two axis positions + spatial + ventrolateral margin + + + Anatomical margin that is located on the ventro-lateral region of the body or body part. + BSPO:wd + + + + + + + + + + antero-dorsal margin + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the antero-dorso region of the body or body part. + BSPO:0000686 + anterodorsal margin + spatial + + + Anatomical margin that is located on the antero-dorso region of the body or body part. + BSPO:wd + + + + + + + + + + postero-dorsal margin + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the postero-dorsal region of the body or body part. + BSPO:0000687 + posterodorsal margin + spatial + + + Anatomical margin that is located on the postero-dorsal region of the body or body part. + BSPO:wd + + + + + + + + + + antero-ventral margin + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the antero-ventral region of the body or body part. + BSPO:0000688 + anteroventral margin + spatial + + + Anatomical margin that is located on the antero-ventral region of the body or body part. + BSPO:wd + + + + + + + + + + postero-ventral margin + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Anatomical margin that is located on the postero-ventral region of the body or body part. + BSPO:0000689 + posteroventral margin + spatial + + + Anatomical margin that is located on the postero-ventral region of the body or body part. + BSPO:wd + + + + + + + + + + medial-lateral axis + + An axis that extends from the center of organism to one or other side. + BSPO:0001001 + M-L axis + ML axis + Properly, the ML axis is a half axis; practically, its usage is less clumsy and less linguistically biased than "left-right". The terms may still be used relatively to describe locations along the LR axis. The gills are medial to the operculum, but lateral to the heart. + http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG + medio-lateral axis + mediolateral axis + proximal-distal axis + spatial + + + An axis that extends from the center of organism to one or other side. + BSPO:cjm + + + + + + + + + + anatomical entity + Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. + CARO:0000000 + spatial + + + Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species. + CARO:MAH + + + + + + + + + + anatomical structure + + CARO:0000003 + Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome. + spatial + + + CC:DOS + Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome. + + + + + + + + + + material anatomical entity + + An anatomical entity that has mass. + CARO:0000006 + spatial + + + An anatomical entity that has mass. + CC:DOS + + + + + + + + + + immaterial anatomical entity + + An anatomical entity that has no mass. + CARO:0000007 + spatial + + + An anatomical entity that has no mass. + CC:DOS + + + + + + + + + + anatomical line + + A one dimensional, immaterial anatomical entity. + CARO:0000008 + spatial + + + A one dimensional, immaterial anatomical entity. + CC:DOS + + + + + + + + + + anatomical boundary + + A non-material anatomical entity of two dimensions. Anatomical boundaries are contiguous structures. + CARO:0000010 + spatial + + + A non-material anatomical entity of two dimensions. Anatomical boundaries are contiguous structures. + CC:DOS + + + + + + + + +