ODK Release January 16 2024

obophenotype · Jan 16, 2024 · c8e1257 · c8e1257
1 parent cd564bb
commit c8e1257
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Showing 28 changed files with 353,883 additions and 2,129,296 deletions.
diff --git a/patterns/definitions.owl b/patterns/definitions.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/wbphenotype/patterns/definitions.owl>
-<http://purl.obolibrary.org/obo/wbphenotype/releases/2023-09-26/patterns/definitions.owl>
-Annotation(owl:versionInfo "2023-09-26")
+<http://purl.obolibrary.org/obo/wbphenotype/releases/2024-01-16/patterns/definitions.owl>
+Annotation(owl:versionInfo "2024-01-16")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/CARO_0010004>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_15355>))

diff --git a/src/ontology/imports/bfo_import.owl b/src/ontology/imports/bfo_import.owl
@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/wbphenotype/imports/bfo_import.owl>
-<http://purl.obolibrary.org/obo/wbphenotype/releases/2023-09-26/imports/bfo_import.owl>
+<http://purl.obolibrary.org/obo/wbphenotype/releases/2024-01-16/imports/bfo_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl>)
-Annotation(owl:versionInfo "2023-09-26")
+Annotation(owl:versionInfo "2024-01-16")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))

diff --git a/src/ontology/imports/chebi_import.owl b/src/ontology/imports/chebi_import.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/wbphenotype/imports/chebi_import.owl>
-<http://purl.obolibrary.org/obo/wbphenotype/releases/2023-09-26/imports/chebi_import.owl>
-Annotation(owl:versionInfo "2023-09-26")
+<http://purl.obolibrary.org/obo/wbphenotype/releases/2024-01-16/imports/chebi_import.owl>
+Annotation(owl:versionInfo "2024-01-16")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_10545>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_131604>))
@@ -127,6 +127,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_18723>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_19129>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_193111>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_194338>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_197506>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_19834>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_20702>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_20706>))
@@ -5355,14 +5356,13 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/charge> <http://purl.o
 AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/formula> <http://purl.obolibrary.org/obo/CHEBI_18140> "HX")
 AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/mass> <http://purl.obolibrary.org/obo/CHEBI_18140> "1.008")
 AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/monoisotopicmass> <http://purl.obolibrary.org/obo/CHEBI_18140> "1.00783")
-AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/smiles> <http://purl.obolibrary.org/obo/CHEBI_18140> "[F,Cl,Br,I]")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/chebi/smiles> <http://purl.obolibrary.org/obo/CHEBI_18140> "*[H]")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasAlternativeId> <http://purl.obolibrary.org/obo/CHEBI_18140> "CHEBI:13368")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasAlternativeId> <http://purl.obolibrary.org/obo/CHEBI_18140> "CHEBI:37140")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasAlternativeId> <http://purl.obolibrary.org/obo/CHEBI_18140> "CHEBI:5599")
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "IUPAC") <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/CHEBI_18140> "hydrogen halide")
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "IUPAC") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/chebi#IUPAC_NAME>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/CHEBI_18140> "hydrogen halides")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CHEBI_18140> "chebi_ontology")
-AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "UniProt") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/CHEBI_18140> "HX")
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ChEBI") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/CHEBI_18140> "hydrogen halides")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/CHEBI_18140> "CHEBI:18140")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_18140> <http://purl.obolibrary.org/obo/chebi#3_STAR>)
@@ -5825,6 +5825,16 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CHEBI_194338> "T-type calcium channel blocker")
 SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_194338> <http://purl.obolibrary.org/obo/CHEBI_38215>)
 
+# Class: <http://purl.obolibrary.org/obo/CHEBI_197506> (medium-chain fatty alcohol)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CHEBI_197506> "Any fatty alcohol with a chain length between C6 and C12.")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CHEBI_197506> "chebi_ontology")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ChEBI") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/CHEBI_197506> "medium-chain fatty alcohols")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/CHEBI_197506> "CHEBI:197506")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_197506> <http://purl.obolibrary.org/obo/chebi#3_STAR>)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CHEBI_197506> "medium-chain fatty alcohol")
+SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_197506> <http://purl.obolibrary.org/obo/CHEBI_24026>)
+
 # Class: <http://purl.obolibrary.org/obo/CHEBI_19834> (3',5'-cyclic purine nucleotide)
 
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CHEBI_19834> "chebi_ontology")
@@ -6739,6 +6749,7 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CHEBI_24026> "chebi_ontology")
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ChEBI") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/CHEBI_24026> "Fettalkohol")
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ChEBI") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/CHEBI_24026> "Fettalkohole")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "UniProt") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/CHEBI_24026> "a fatty alcohol")
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ChEBI") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/CHEBI_24026> "alcool gras")
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ChEBI") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/CHEBI_24026> "fatty alcohols")
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "LIPID_MAPS") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/CHEBI_24026> "fatty alcohols")
@@ -16644,7 +16655,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://pu
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_37868> <http://purl.obolibrary.org/obo/chebi#3_STAR>)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CHEBI_37868> "octanol")
 SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_37868> <http://purl.obolibrary.org/obo/CHEBI_134179>)
-SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_37868> <http://purl.obolibrary.org/obo/CHEBI_24026>)
+SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_37868> <http://purl.obolibrary.org/obo/CHEBI_197506>)
 SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_37868> <http://purl.obolibrary.org/obo/CHEBI_50584>)
 SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_37868> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/chebi#has_parent_hydride> <http://purl.obolibrary.org/obo/CHEBI_17590>))
 
@@ -24605,8 +24616,7 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/CHEBI_83813> "CHEBI:83813")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CHEBI_83813> <http://purl.obolibrary.org/obo/chebi#3_STAR>)
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/CHEBI_83813> "proteinogenic amino acid")
-SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_83813> <http://purl.obolibrary.org/obo/CHEBI_33575>)
-SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_83813> <http://purl.obolibrary.org/obo/CHEBI_35352>)
+SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_83813> <http://purl.obolibrary.org/obo/CHEBI_33709>)
 
 # Class: <http://purl.obolibrary.org/obo/CHEBI_83820> (non-proteinogenic amino acid)
 
@@ -24962,6 +24972,8 @@ SubClassOf(<http://purl.obolibrary.org/obo/CHEBI_88230> <http://purl.obolibrary.
 # Class: <http://purl.obolibrary.org/obo/CHEBI_90710> (receptor modulator)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/CHEBI_90710> "A drug that acts as an antagonist, agonist, reverse agonist, or in some other fashion when interacting with cellular receptors.")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasAlternativeId> <http://purl.obolibrary.org/obo/CHEBI_90710> "CHEBI:189678")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/CHEBI_90710> "Wikipedia:Receptor_modulator")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/CHEBI_90710> "chebi_ontology")
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ChEBI") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/CHEBI_90710> "receptor modulators")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/CHEBI_90710> "CHEBI:90710")