From 54c2123d3eb6d6b2275b40d2d2da714e6938877b Mon Sep 17 00:00:00 2001 From: Caroline Eastwood Date: Fri, 28 Jun 2024 13:17:09 +0100 Subject: [PATCH 1/4] Added "lumen of alveolus" to Uberon -Added logical defintions -Added textual defintion with a reference -Added synonyms --- src/ontology/uberon-edit.obo | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index fd51d6786..d0bd2419c 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -224517,6 +224517,20 @@ relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 ! Aleix Puig- relationship: located_in UBERON:8600025 ! intervillous space property_value: dcterms-date "2024-04-15T10:05:35Z" xsd:dateTime +[Term] +id: UBERON:8850000 +name: lumen of alveolus +def: "An anatomical cavity that is part of the alveolus of the lung" [PMID:30390118] +synonym: "Alveolar lumen" EXACT [] +synonym: "Cavity of pulmonary alveolus" EXACT [FMA:62779] +synonym: "Lumen of pulmonary alveolus" EXACT [FMA:62779] +synonym: "Pulmonary alveolar cavity" EXACT [FMA:62779] +intersection_of: UBERON:0000464 ! anatomical space +intersection_of: luminal_space_of UBERON:0002299 ! alveolus of lung +relationship: dc-contributor https://orcid.org/0009-0000-8480-9277 +relationship: part_of UBERON:0002299 ! alveolus of lung +property_value: dcterms-date "2024-06-28T10:50:18Z" xsd:dateTime + [Typedef] id: aboral_to name: aboral to From ae73b29f2541639d63c6c759bdffcf9974ae8b10 Mon Sep 17 00:00:00 2001 From: Caroline Eastwood Date: Fri, 28 Jun 2024 16:06:28 +0100 Subject: [PATCH 2/4] Update uberon-edit.obo --- src/ontology/uberon-edit.obo | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index d0bd2419c..a5bd3ef5e 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -224519,16 +224519,16 @@ property_value: dcterms-date "2024-04-15T10:05:35Z" xsd:dateTime [Term] id: UBERON:8850000 -name: lumen of alveolus +name: alveolar lumen def: "An anatomical cavity that is part of the alveolus of the lung" [PMID:30390118] -synonym: "Alveolar lumen" EXACT [] -synonym: "Cavity of pulmonary alveolus" EXACT [FMA:62779] -synonym: "Lumen of pulmonary alveolus" EXACT [FMA:62779] -synonym: "Pulmonary alveolar cavity" EXACT [FMA:62779] -intersection_of: UBERON:0000464 ! anatomical space +synonym: "cavity of pulmonary alveolus" EXACT [FMA:62779] +synonym: "lumen of alveolus" EXACT [PMID:33806395] +synonym: "lumen of pulmonary alveolus" EXACT [FMA:62779] +synonym: "pulmonary alveolar cavity" EXACT [FMA:62779] +xref: FMA:62779 +intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0002299 ! alveolus of lung relationship: dc-contributor https://orcid.org/0009-0000-8480-9277 -relationship: part_of UBERON:0002299 ! alveolus of lung property_value: dcterms-date "2024-06-28T10:50:18Z" xsd:dateTime [Typedef] From 31c298ec4bbaaa8d4ba9aede6f9b76727c50067b Mon Sep 17 00:00:00 2001 From: Caroline Eastwood Date: Thu, 4 Jul 2024 12:11:26 +0100 Subject: [PATCH 3/4] Updated the label to "lumen of pulmonary alveolus" --- src/ontology/uberon-edit.obo | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index a5bd3ef5e..01998e62e 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -224519,11 +224519,11 @@ property_value: dcterms-date "2024-04-15T10:05:35Z" xsd:dateTime [Term] id: UBERON:8850000 -name: alveolar lumen -def: "An anatomical cavity that is part of the alveolus of the lung" [PMID:30390118] +name: lumen of pulmonary alveolus +def: "An anatomical cavity that is part of the alveolus of the lung" [FMA:62779] +synonym: "alveolar lumen" EXACT [PMID:30390118] synonym: "cavity of pulmonary alveolus" EXACT [FMA:62779] synonym: "lumen of alveolus" EXACT [PMID:33806395] -synonym: "lumen of pulmonary alveolus" EXACT [FMA:62779] synonym: "pulmonary alveolar cavity" EXACT [FMA:62779] xref: FMA:62779 intersection_of: UBERON:0002553 ! anatomical cavity From f478fe5b9e2b82f78b6d7f01b1d8428c1c7a4b36 Mon Sep 17 00:00:00 2001 From: Caroline Eastwood Date: Thu, 4 Jul 2024 12:22:13 +0100 Subject: [PATCH 4/4] Updated synonyms Changed "lumen of alveolus" and "alveolar lumen" to broad synonyms --- src/ontology/uberon-edit.obo | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 01998e62e..f20ce402a 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -224520,10 +224520,10 @@ property_value: dcterms-date "2024-04-15T10:05:35Z" xsd:dateTime [Term] id: UBERON:8850000 name: lumen of pulmonary alveolus -def: "An anatomical cavity that is part of the alveolus of the lung" [FMA:62779] -synonym: "alveolar lumen" EXACT [PMID:30390118] +def: "An anatomical cavity that is part of the alveolus of the lung" [PMID:30390118] +synonym: "alveolar lumen" BROAD [PMID:30390118] synonym: "cavity of pulmonary alveolus" EXACT [FMA:62779] -synonym: "lumen of alveolus" EXACT [PMID:33806395] +synonym: "lumen of alveolus" BROAD [PMID:33806395] synonym: "pulmonary alveolar cavity" EXACT [FMA:62779] xref: FMA:62779 intersection_of: UBERON:0002553 ! anatomical cavity