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remove classification of endothelium from under epithelium #3385

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dosumis opened this issue Oct 21, 2024 · 2 comments
Open

remove classification of endothelium from under epithelium #3385

dosumis opened this issue Oct 21, 2024 · 2 comments

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@dosumis
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dosumis commented Oct 21, 2024

This has already been done for the cell types in CL.

obophenotype/cell-ontology#1492

See this ticket for discussion

As for CL, there are some cases where we are getting automated classifications that are counter-intuitive for users.

@dosumis
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dosumis commented Oct 21, 2024

This is a little more challenging than the CL equivalent.
I think that general class will need to move to under 'tissue' - or maybe we could have a new grouping - epithelial-like?

@cmungall
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cmungall commented Oct 21, 2024

Some original discussion here:

however, this left things in a confusing state. The GO discussion ended up supporting @dosumis's proposal - but at the same time GO delegated to Uberon/CL, which continued to say endo is-a epi.

I was sure we had an issue in this tracker where we discussed this in some detail, and decided that endo is-a epi... but I cannot find this!

FWIW

  • ZFA has some implicit endo is-a epi classifications, but not consistent
  • EMAPA does not
  • FMA treats endo as (meso)epi

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