From 9787c637280491e98e13489e7ddd64c0e6c0eff5 Mon Sep 17 00:00:00 2001
From: aleixpuig <94959119+aleixpuigb@users.noreply.github.com>
Date: Mon, 10 Jun 2024 11:13:47 +0100
Subject: [PATCH 1/2] Fixes #2804 obsolete 'lacrimal' into 'lacrimal bone'

Fixes #2804 obsolete 'lacrimal' into 'lacrimal bone'
---
 src/ontology/uberon-edit.obo | 10 +++++++---
 1 file changed, 7 insertions(+), 3 deletions(-)

diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo
index 8491f67abd..91e2f767fe 100644
--- a/src/ontology/uberon-edit.obo
+++ b/src/ontology/uberon-edit.obo
@@ -27868,6 +27868,7 @@ def: "The irregularly thin plate that forms part of the medial wall of the orbit
 subset: pheno_slim
 subset: uberon_slim
 subset: vertebrate_core
+synonym: "ectethmoid" RELATED [UBERON:3010146]
 synonym: "infraorbital 1" RELATED SENSU [VHOG:0001149, ZFA:0000223]
 synonym: "lachrymal bone" EXACT []
 synonym: "lachrymal bone - infraorbital 1" RELATED [VHOG:0001149]
@@ -210549,11 +210550,14 @@ replaced_by: UBERON:3010728
 
 [Term]
 id: UBERON:3010146
-name: lacrimal
-def: "Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." [AAO:EJS]
+name: obsolete lacrimal
+def: "OBSOLETE. Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." [AAO:EJS]
+comment: The synonym of this term has been merged into 'lacrimal bone'.
 synonym: "ectethmoid" RELATED [UBERON:3010146]
-is_a: UBERON:0006813 ! nasal skeleton
+property_value: IAO:0000231 "https://github.com/obophenotype/uberon/issues/2804" xsd:string
 property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"}
+is_obsolete: true
+replaced_by: UBERON:0001680
 
 [Term]
 id: UBERON:3010156

From 377d267d5a0ab29d828ff0a344587dcd0e0d4088 Mon Sep 17 00:00:00 2001
From: aleixpuig <94959119+aleixpuigb@users.noreply.github.com>
Date: Mon, 10 Jun 2024 12:26:41 +0100
Subject: [PATCH 2/2] Fix wrong annotation property

---
 src/ontology/uberon-edit.obo | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo
index 91e2f767fe..eb374320bc 100644
--- a/src/ontology/uberon-edit.obo
+++ b/src/ontology/uberon-edit.obo
@@ -210554,8 +210554,8 @@ name: obsolete lacrimal
 def: "OBSOLETE. Investing bone in non-teleosts associated with nasolacrimal duct and lying between pars facialis of maxilla and prefrontal and sometimes nasal." [AAO:EJS]
 comment: The synonym of this term has been merged into 'lacrimal bone'.
 synonym: "ectethmoid" RELATED [UBERON:3010146]
-property_value: IAO:0000231 "https://github.com/obophenotype/uberon/issues/2804" xsd:string
 property_value: provenance_notes "This class was sourced from an external ontology (amphibian_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/aao.owl"}
+property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2804" xsd:string
 is_obsolete: true
 replaced_by: UBERON:0001680