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Subdivision_of now SubProp of part_of #3320

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Subdivision_of now SubProp of part_of #3320

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f1cbc26
Subdivision_of now SubProp of part_of
dosumis Jul 26, 2024
0570311
Merge branch 'master' into subdivision_of_subPropOf_part_of
dosumis Jul 26, 2024
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17 changes: 9 additions & 8 deletions src/ontology/uberon-edit.obo
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Original file line number Diff line number Diff line change
Expand Up @@ -931,7 +931,7 @@ intersection_of: UBERON:0000026 ! appendage
intersection_of: has_quality PATO:0002236 ! aliform
relationship: capable_of_part_of GO:0060361 ! flight
relationship: never_in_taxon NCBITaxon:118072 {source="bgee"} ! Coelacanthimorpha
relationship: never_in_taxon NCBITaxon:186634 {source="bgee", seeAlso="Wikipedia:Flying_fish"} ! Otomorpha
relationship: never_in_taxon NCBITaxon:186634 {seeAlso="Wikipedia:Flying_fish", source="bgee"} ! Otomorpha
relationship: never_in_taxon NCBITaxon:314147 {source="bgee"} ! Glires
relationship: never_in_taxon NCBITaxon:6231 {source="bgee"} ! Nematoda
relationship: never_in_taxon NCBITaxon:7878 {source="bgee"} ! Dipnomorpha
Expand Down Expand Up @@ -22397,7 +22397,7 @@ relationship: preaxialmost_part_of UBERON:0002398 ! manus
property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/6/64/Thumb-up.jpg" xsd:anyURI
property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/2c/Thumbs_up.jpg" xsd:anyURI
property_value: taxon_notes "Not present in Anurans (Phenotype RCN Oct 2012)" xsd:string
property_value: taxon_notes "This class represents the standard tetrapod configuration. Wagner proposes that avian digits I,II,III develop from C2,C3,C4. To support this scheme we have separate classes representing the avian digits (here called alula, manual digit, major digit)." xsd:string {scope="NCBITaxon:8782", source="PMID:10220427", source="PhenoscapeRCN", seeAlso="UBERON:0012260"}
property_value: taxon_notes "This class represents the standard tetrapod configuration. Wagner proposes that avian digits I,II,III develop from C2,C3,C4. To support this scheme we have separate classes representing the avian digits (here called alula, manual digit, major digit)." xsd:string {scope="NCBITaxon:8782", seeAlso="UBERON:0012260", source="PMID:10220427", source="PhenoscapeRCN"}

[Term]
id: UBERON:0001464
Expand Down Expand Up @@ -28081,7 +28081,7 @@ relationship: part_of UBERON:0010272 ! hyoid apparatus
property_value: axiom_lost_from_external_ontology "relationship loss: part_of hyoid plate (AAO:0000664)[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000684", ontology="AAO"}
property_value: depiction "http://upload.wikimedia.org/wikipedia/commons/1/1f/Gray186.png" xsd:anyURI
property_value: external_definition "Paired processes that extend posterolaterally from the posterior margin of the hyoid plate. These processes are the ossified posteromedial processes and invest the laryngeal apparatus.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000684", ontology="AAO", source="AAO:LAP"}
property_value: taxon_notes "The hyoid bone is derived from the lower half of the second gill arch in fish, which separates the first gill slit from the spiracle. In many animals, it also incorporates elements of other gill arches, and has a correspondingly greater number of cornua. Amphibians and reptiles may have many cornua, while mammals (including humans) have two pairs, and birds only one. In birds, and some reptiles, the body of the hyoid is greatly extended forward, creating a solid bony support for the tongue. The howler monkey Alouatta has a pneumatized hyoid bone, one of the few cases of postcranial pneumatization of bones outside Saurischia." xsd:string {source="WP", seeAlso="https://github.com/obophenotype/uberon/issues/548"}
property_value: taxon_notes "The hyoid bone is derived from the lower half of the second gill arch in fish, which separates the first gill slit from the spiracle. In many animals, it also incorporates elements of other gill arches, and has a correspondingly greater number of cornua. Amphibians and reptiles may have many cornua, while mammals (including humans) have two pairs, and birds only one. In birds, and some reptiles, the body of the hyoid is greatly extended forward, creating a solid bony support for the tongue. The howler monkey Alouatta has a pneumatized hyoid bone, one of the few cases of postcranial pneumatization of bones outside Saurischia." xsd:string {seeAlso="https://github.com/obophenotype/uberon/issues/548", source="WP"}

[Term]
id: UBERON:0001686
Expand Down Expand Up @@ -38558,7 +38558,7 @@ xref: Wikipedia:Spinal_accessory_nerve
xref: XAO:0004214
intersection_of: UBERON:0001021 ! nerve
intersection_of: extends_fibers_into UBERON:0020358 ! accessory XI nerve nucleus
relationship: dubious_for_taxon NCBITaxon:8292 {source="VHOG", source="Wikipedia", seeAlso="http://code.google.com/p/xenopus-anatomy-ontology/issues/detail?id=7"} ! Amphibia
relationship: dubious_for_taxon NCBITaxon:8292 {seeAlso="http://code.google.com/p/xenopus-anatomy-ontology/issues/detail?id=7", source="VHOG", source="Wikipedia"} ! Amphibia
relationship: innervates UBERON:0001737 ! larynx
relationship: innervates UBERON:3010692 {gci_relation="part_of", gci_filler="NCBITaxon:8292", source="ISBN:080184780X"} ! m. cucullaris
relationship: only_in_taxon NCBITaxon:32523 ! Tetrapoda
Expand Down Expand Up @@ -74559,7 +74559,7 @@ relationship: part_of UBERON:5003622 ! manual digit 2 plus metapodial segment
property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/d/d5/Index_finger.JPG" xsd:anyURI
property_value: has_relational_adjective "indicis" xsd:string
property_value: taxon_notes "Anurans lack manual digit 1, so manual digit 2 is the digit after the prepollex (Phenotype RCN Oct 2012)" xsd:string
property_value: taxon_notes "This class represents the standard tetrapod configuration. Wagner proposes that avian digits I,II,III develop from C2,C3,C4. To support this scheme we have separate classes representing the avian digits (here called alula, manual digit, major digit)." xsd:string {scope="NCBITaxon:8782", source="PMID:10220427", source="PhenoscapeRCN", seeAlso="UBERON:0012261"}
property_value: taxon_notes "This class represents the standard tetrapod configuration. Wagner proposes that avian digits I,II,III develop from C2,C3,C4. To support this scheme we have separate classes representing the avian digits (here called alula, manual digit, major digit)." xsd:string {scope="NCBITaxon:8782", seeAlso="UBERON:0012261", source="PMID:10220427", source="PhenoscapeRCN"}

[Term]
id: UBERON:0003623
Expand Down Expand Up @@ -74596,7 +74596,7 @@ relationship: ambiguous_for_taxon NCBITaxon:8782 ! Aves
relationship: part_of UBERON:0012141 {source="https://github.com/obophenotype/uberon/wiki/Inferring-part-of-relationships"} ! manual digitopodium region
relationship: part_of UBERON:5003623 ! manual digit 3 plus metapodial segment
property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/f/fd/Middle_finger.jpg" xsd:anyURI
property_value: taxon_notes "This class represents the standard tetrapod configuration. Wagner proposes that avian digits I,II,III develop from C2,C3,C4. To support this scheme we have separate classes representing the avian digits (here called alula, manual digit, major digit)." xsd:string {scope="NCBITaxon:8782", source="PMID:10220427", source="PhenoscapeRCN", seeAlso="UBERON:0012262"}
property_value: taxon_notes "This class represents the standard tetrapod configuration. Wagner proposes that avian digits I,II,III develop from C2,C3,C4. To support this scheme we have separate classes representing the avian digits (here called alula, manual digit, major digit)." xsd:string {scope="NCBITaxon:8782", seeAlso="UBERON:0012262", source="PMID:10220427", source="PhenoscapeRCN"}

[Term]
id: UBERON:0003624
Expand Down Expand Up @@ -138818,7 +138818,7 @@ name: spleen marginal sinus
def: "The border region surrounding the spleen B cell follicles and the periarteriolar lymphoid sheath that separates it from the marginal zone that mediates lymphocyte entry into the white pulp from the blood." [MP:MP]
subset: pheno_slim
synonym: "splenic marginal sinus" EXACT [MP:0002363]
xref: EMAPA:37964 {seeAlso="https://github.com/obophenotype/mouse-anatomy-ontology/issues/117", source="MA:th"}
xref: EMAPA:37964 {source="MA:th", seeAlso="https://github.com/obophenotype/mouse-anatomy-ontology/issues/117"}
xref: MA:0000754
xref: NCIT:C49776
xref: UMLS:C1710157 {source="ncithesaurus:Splenic_Marginal_Sinus"}
Expand Down Expand Up @@ -151579,7 +151579,7 @@ xref: SCTID:361795009
xref: Wikipedia:Malleolus
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0004410 ! distal epiphysis of fibula
property_value: taxon_notes "In bovids, the distal end of the fibula is present only as the lateral malleolus, a separate bone that articulates with the lateral side of the distal tibia." xsd:string {scope="NCBITaxon:9895", source="UBERON:skansa", seeAlso="UBERON:0004410"}
property_value: taxon_notes "In bovids, the distal end of the fibula is present only as the lateral malleolus, a separate bone that articulates with the lateral side of the distal tibia." xsd:string {scope="NCBITaxon:9895", seeAlso="UBERON:0004410", source="UBERON:skansa"}

[Term]
id: UBERON:0012292
Expand Down Expand Up @@ -225605,6 +225605,7 @@ is_metadata_tag: true
id: subdivision_of
name: subdivision of
comment: placeholder relation. X = 'subdivision of A' and subdivision_of some B means that X is the mereological sum of A and B
is_a: part_of ! part of

[Typedef]
id: superficial_to
Expand Down
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