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Add ethmoidal veins #3348

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merged 17 commits into from
Aug 30, 2024
Merged

Add ethmoidal veins #3348

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310d207
Add ethmoidal veins
rays22 Aug 28, 2024
3110031
Fix unsats
rays22 Aug 28, 2024
348dd31
Update definitions.owl
rays22 Aug 28, 2024
748a34d
Fix a typo in the text definition
rays22 Aug 28, 2024
21c2c99
Merge branch 'ethmoidal_vein' of github.com:obophenotype/uberon into …
rays22 Aug 28, 2024
eefcf32
Update definitions.owl
rays22 Aug 28, 2024
b8ad6fb
Fix incorrect vessel_supplies_blood_to filler
rays22 Aug 28, 2024
bdada59
Update definitions.owl
rays22 Aug 28, 2024
b6eb560
Fix location of ethmoidal vein
rays22 Aug 29, 2024
dd06f74
Merge branch 'ethmoidal_vein' of github.com:obophenotype/uberon into …
rays22 Aug 29, 2024
84fb195
Update definitions.owl
rays22 Aug 29, 2024
ea39556
Improve definitions and references
rays22 Aug 29, 2024
4e29881
Fix tributary
rays22 Aug 29, 2024
5cda5f7
Fix tributary (second attempt)
rays22 Aug 29, 2024
c32f4ab
Update definitions.owl
rays22 Aug 29, 2024
82fe198
Update the partonomy relationship of ethmoid vein
rays22 Aug 29, 2024
8d29b60
Update definitions.owl
rays22 Aug 29, 2024
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5 changes: 4 additions & 1 deletion src/patterns/data/default/vein_and_venule_pattern.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -33,4 +33,7 @@ UBERON:8600092 radial vein FMA:22947 UBERON:0001638 UBERON:0001460 "A vein that
UBERON:8600093 ulnar vein FMA:22950 UBERON:0001638 UBERON:0001460 A vein that is tributary of the brachial vein and drains blood from the hand and medial and posterior aspect of forearm. wikipedia:Ulnar_veins UBERON:0001413 UBERON:0002386|UBERON:0002398 https://orcid.org/0000-0001-6677-8489 2024-06-06T09:53:48Z
UBERON:8600103 anterior internal vertebral venous plexus FMA:4869 UBERON:0001593 UBERON:0002240 "A venous plexus that is tributary of the basivertebral veins and internal vertebral veins, draining blood from the vertebrae and spinal cord. The anterior internal vertebral venous plexus is located within the vertebral canal." wikipedia:Internal_vertebral_venous_plexuses UBERON:8600104 https://orcid.org/0000-0001-6677-8489 2024-06-06T09:53:48Z
UBERON:8600104 intervertebral vein FMA:76736 UBERON:0001638 UBERON:0002240 "A vein that drains blood from the vertebral column and intervertebral discs. In the neck, it is tributary of into the vertebral veins. In the thorax, it is tributary of the posterior intercostal veins. In the lumbar and sacral regions, it is tributary of the lumbar and lateral sacral veins" https://www.kenhub.com/en/library/anatomy/veins-of-the-vertebral-column UBERON:0012199|UBERON:8600105|UBERON:8600056 https://orcid.org/0000-0001-6677-8489 2024-06-06T09:53:48Z
UBERON:8600105 lumbar vein FMA:70889 UBERON:0001638 UBERON:0002355 A vein that is tributary of the inferior vena cava and drains blood from the posterior abdominal wall and lumbar region. https://www.kenhub.com/en/library/anatomy/lumbar-veins set of lumbar veins FMA:70889 UBERON:0001072 UBERON:0003697|UBERON:0005462 https://orcid.org/0000-0001-6677-8489 2024-06-06T09:53:48Z
UBERON:8600105 lumbar vein FMA:70889 UBERON:0001638 UBERON:0002355 A vein that is tributary of the inferior vena cava and drains blood from the posterior abdominal wall and lumbar region. https://www.kenhub.com/en/library/anatomy/lumbar-veins set of lumbar veins FMA:70889 UBERON:0001072 UBERON:0003697|UBERON:0005462 https://orcid.org/0000-0001-6677-8489 2024-06-06T09:53:48Z
UBERON:8420001 ethmoidal vein FMA:51770 UBERON:0001638 UBERON:0002200 A vein that accompanies an ethmoidal artery and drains the ethmoidal cells. wikipedia:Ethmoidal_veins|https://www.ncbi.nlm.nih.gov/books/NBK499826/ UBERON:0011241 https://orcid.org/0000-0001-8314-2140 2024-08-28T09:55:00Z
UBERON:8420002 anterior ethmoidal vein FMA:51771 UBERON:8420001 An ethmoidal vein that accompanies an anterior ethmoidal artery. The anterior ethmoidal vein normally drains into the inferior root of the superior ophthalmic vein. https://doi.org/10.1167/iovs.02-0865|https://doi.org/10.1007/978-3-031-40697-3_23 UBERON:0011192 https://orcid.org/0000-0001-8314-2140 2024-08-28T09:55:00Z
UBERON:8420003 posterior ethmoidal vein FMA:51772 UBERON:8420001 An ethmoidal vein that accompanies a posterior ethmoidal artery. The posterior ethmoidal vein often drains into a venous network under the orbital roof. https://doi.org/10.1167/iovs.02-0865|https://doi.org/10.1007/978-3-031-40697-3_23 https://orcid.org/0000-0001-8314-2140 2024-08-28T09:55:00Z
40 changes: 38 additions & 2 deletions src/patterns/definitions.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/uberon/patterns/definitions.owl>
<http://purl.obolibrary.org/obo/uberon/releases/2024-08-21/patterns/definitions.owl>
Annotation(owl:versionInfo "2024-08-21")
<http://purl.obolibrary.org/obo/uberon/releases/2024-08-29/patterns/definitions.owl>
Annotation(owl:versionInfo "2024-08-29")

Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0000004>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0000007>))
Expand Down Expand Up @@ -78,6 +78,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0002060>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0002084>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0002094>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0002103>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0002200>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0002240>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0002299>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0002345>))
Expand Down Expand Up @@ -111,6 +112,8 @@ Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0009679>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0010369>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0010496>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0010743>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0011192>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0011241>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0011640>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0012199>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0013137>))
Expand Down Expand Up @@ -145,6 +148,9 @@ Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0018598>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0018599>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0018600>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0039262>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8420001>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8420002>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8420003>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8490000>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8490001>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_8490002>))
Expand Down Expand Up @@ -290,6 +296,36 @@ SubClassOf(<http://purl.obolibrary.org/obo/UBERON_0001394> ObjectSomeValuesFrom(

SubClassOf(<http://purl.obolibrary.org/obo/UBERON_0013137> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002252> <http://purl.obolibrary.org/obo/UBERON_0002060>))

# Class: <http://purl.obolibrary.org/obo/UBERON_8420001> (ethmoidal vein)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://www.ncbi.nlm.nih.gov/books/NBK499826/") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "wikipedia:Ethmoidal_veins") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_8420001> "A vein that accompanies an ethmoidal artery and drains the ethmoidal cells.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/UBERON_8420001> <https://orcid.org/0000-0001-8314-2140>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/UBERON_8420001> "2024-08-28T09:55:00Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_8420001> "FMA:51770")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_8420001> "ethmoidal vein")
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8420001> <http://purl.obolibrary.org/obo/UBERON_0001638>)
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8420001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/UBERON_0002200>))
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8420001> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0020102> <http://purl.obolibrary.org/obo/UBERON_0011241>))

# Class: <http://purl.obolibrary.org/obo/UBERON_8420002> (anterior ethmoidal vein)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://doi.org/10.1007/978-3-031-40697-3_23") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://doi.org/10.1167/iovs.02-0865") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_8420002> "An ethmoidal vein that accompanies an anterior ethmoidal artery. The anterior ethmoidal vein normally drains into the inferior root of the superior ophthalmic vein.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/UBERON_8420002> <https://orcid.org/0000-0001-8314-2140>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/UBERON_8420002> "2024-08-28T09:55:00Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_8420002> "FMA:51771")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_8420002> "anterior ethmoidal vein")
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8420002> <http://purl.obolibrary.org/obo/UBERON_8420001>)
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8420002> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002376> <http://purl.obolibrary.org/obo/UBERON_0011192>))

# Class: <http://purl.obolibrary.org/obo/UBERON_8420003> (posterior ethmoidal vein)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://doi.org/10.1007/978-3-031-40697-3_23") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://doi.org/10.1167/iovs.02-0865") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_8420003> "An ethmoidal vein that accompanies a posterior ethmoidal artery. The posterior ethmoidal vein often drains into a venous network under the orbital roof.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> <http://purl.obolibrary.org/obo/UBERON_8420003> <https://orcid.org/0000-0001-8314-2140>)
AnnotationAssertion(<http://purl.org/dc/terms/date> <http://purl.obolibrary.org/obo/UBERON_8420003> "2024-08-28T09:55:00Z")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_8420003> "FMA:51772")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_8420003> "posterior ethmoidal vein")
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_8420003> <http://purl.obolibrary.org/obo/UBERON_8420001>)

# Class: <http://purl.obolibrary.org/obo/UBERON_8490000> (right upper third secondary molar tooth)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_8490000> "A upper third secondary molar tooth that is in the right side of the upper jaw region.")
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