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Adding gross anatomical part. Fixes #2921 #3374

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Adding gross anatomical part. Fixes #2921 #3374

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fcc9edf
Adding gross anatomical part. Fixes #2921
cmungall Sep 23, 2024
78c1dbf
axioms
cmungall Sep 23, 2024
1a338fe
fix unsat
cmungall Oct 17, 2024
e50c29a
Merge branch 'master' into issue-2921
cmungall Oct 17, 2024
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22 changes: 16 additions & 6 deletions src/ontology/uberon-edit.obo
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Original file line number Diff line number Diff line change
Expand Up @@ -233,6 +233,17 @@ relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae
relationship: present_in_taxon NCBITaxon:33208 ! Metazoa
relationship: present_in_taxon NCBITaxon:4751 ! Fungi

[Term]
id: UBERON:0000001 ! gross anatomical part
name: gross anatomical part
def: "Anatomical structure that is part of a multicellular organism and is at the gross anatomical level, e.g. above the level of a cell. Included are portions of organism substances such as blood, multi-cell-part structures such as axon tracts, acellular anatomical structures such as hair, and organism subdivisions such as head. Excluded is the whole organism and more granular parts of the organism, such as atoms, molecules, macromolecular complexes and cells." [CARO:0001008]
xref: CARO:0001008
disjoint_from: GO:0005623 ! cell
disjoint_from: GO:0110165 ! cellular anatomical entity
disjoint_from: UBERON:0000468 ! multicellular organism
is_a: UBERON:0000465 ! material anatomical entity
relationship: in_taxon NCBITaxon:2759 ! Eukaryota

[Term]
id: UBERON:0000002
name: uterine cervix
Expand Down Expand Up @@ -6813,7 +6824,7 @@ xref: TGMA:0001824
xref: VHOG:0001726
xref: XAO:0004001
xref: ZFA:0001487
is_a: UBERON:0000465 ! material anatomical entity
is_a: UBERON:0000001 ! gross anatomical part
relationship: has_quality PATO:0002198 ! quality of a substance
relationship: part_of UBERON:0000468 {notes="this relationship may be too strong and may be weakened in future"} ! multicellular organism
relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae
Expand Down Expand Up @@ -7227,7 +7238,7 @@ xref: TAO:0000382
xref: TGMA:0001841
xref: XAO:0003162
xref: ZFA:0000382
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000001 ! gross anatomical part
disjoint_from: UBERON:0010000 {source="CARO"} ! multicellular anatomical structure
relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae
relationship: present_in_taxon NCBITaxon:33208 ! Metazoa
Expand Down Expand Up @@ -101229,7 +101240,7 @@ xref: CALOHA:TS-2122
xref: EHDAA2:0003125
xref: FMA:292313
xref: MIAA:0000019
is_a: UBERON:0000465 ! material anatomical entity
is_a: UBERON:0000001 ! gross anatomical part
relationship: capable_of GO:0032502 ! developmental process
relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae
relationship: present_in_taxon NCBITaxon:33208 ! Metazoa
Expand Down Expand Up @@ -156099,7 +156110,6 @@ synonym: "midline birth canal" RELATED []
intersection_of: UBERON:0000996 ! vagina
intersection_of: connected_to UBERON:0013523 ! lateral vaginal canal
intersection_of: intersects_midsagittal_plane_of UBERON:0003975 ! internal female genitalia
relationship: channel_for UBERON:0000922 ! embryo
relationship: in_taxon NCBITaxon:9263 {editor="cjm"} ! Metatheria

[Term]
Expand Down Expand Up @@ -187335,7 +187345,7 @@ def: "Material anatomical entity that forms the outermost boundary of an anatomi
subset: common_anatomy
xref: AAO:0010270
xref: ZFA:0005594
is_a: UBERON:0000465 ! material anatomical entity
is_a: UBERON:0000001 ! gross anatomical part
relationship: bounding_layer_of UBERON:0000061 ! anatomical structure
relationship: present_in_taxon NCBITaxon:33090 ! Viridiplantae
relationship: present_in_taxon NCBITaxon:33208 ! Metazoa
Expand Down Expand Up @@ -220291,7 +220301,7 @@ relationship: in_taxon NCBITaxon:50557 ! Insecta
id: UBERON:6040005
name: insect synaptic neuropil
def: "The part of the neuropil consisting largely of synapsing neuron projections." [FlyBase:FBrf0224194]
is_a: UBERON:0000465 ! material anatomical entity
is_a: UBERON:0000001 ! gross anatomical part
relationship: in_taxon NCBITaxon:50557 ! Insecta
relationship: part_of UBERON:0002606 ! neuropil

Expand Down
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