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Issues list

Installed from bioconda, see function files there, but can't run the software
#113 opened Oct 29, 2024 by Oceanyq
shapeit5 for Structural Variations
#111 opened Sep 17, 2024 by Zuyan4
No static binaries for Linux/RHEL found in the download links
#110 opened Aug 29, 2024 by Toseph
1
phase_common sometimes creates Mendelian errors for missing genotypes when phasing with --pedigree
#109 opened Aug 23, 2024 by kkellysci
ligate won't treat offspring as scaffolded unless parents are still in data
#108 opened Aug 22, 2024 by kkellysci
[QUESTION] Partially phased VCF as input
#106 opened Jul 20, 2024 by davidyuyuan
1
Feature request: VCF output
#105 opened Jul 18, 2024 by pettyalex
1
about merging multiallelics
#104 opened Jun 19, 2024 by vicbp1
vcf_to_sparse.py location for compound het detection
#103 opened Jun 11, 2024 by Naughtoncolin
Can only run a few base positions on chromosome X
#102 opened Jun 10, 2024 by milena-andreuzo
3
Bug for nonPAR chrX: heterozygous haploids in the phased output.
#100 opened Apr 23, 2024 by dtaliun
2
Phasing chromosome X is wrong when males are encoded as haploids in input VCF/BCF
#99 opened Apr 22, 2024 by dtaliun
AN field in the phase_common phased data is different from the AN in unphased data
#98 opened Apr 13, 2024 by lessdata
phase_common failing at PBWT step
#96 opened Apr 9, 2024 by nmshahir
2
feature request: Mac OS and Linux ARM64 compatibility?
#95 opened Mar 26, 2024 by pettyalex
2
illegal instruction error on phase_common_static on cow array data
#94 opened Mar 22, 2024 by lholivera
2
No SER computed
#93 opened Mar 19, 2024 by bilgetbak
Plot phasing results
#91 opened Mar 10, 2024 by michal-yoles
1
Cannot proceed after installation
#89 opened Feb 14, 2024 by suraya01
No variant found
#88 opened Feb 6, 2024 by niv280
8
Switch Program Output File
#86 opened Jan 25, 2024 by AkkshayaRajesh
Phasing small sample sizes
#85 opened Jan 8, 2024 by sihaybo
3
--mcmc-noinit option doesn't work
#84 opened Jan 3, 2024 by ndokmai
Interpretation of 0|0:.
#81 opened Dec 13, 2023 by hara555555
Working with SVs: preserve INFO/END field after phase_common
#72 opened Nov 26, 2023 by dtaliun
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