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Snakemake: Validate CSV format for multiplex input data #1

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okartal opened this issue Dec 31, 2018 · 0 comments
Open

Snakemake: Validate CSV format for multiplex input data #1

okartal opened this issue Dec 31, 2018 · 0 comments
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enhancement New feature or request

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@okartal
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okartal commented Dec 31, 2018

Snakemake has a function snakemake.utils.validate for validating the samples data frame with a JSON schema, see docs. Use this instead of putting comments in config.yaml and assuming that everything is correct
@okartal okartal added the enhancement New feature or request label Dec 31, 2018
@okartal okartal changed the title The CSV format of sample data should be validated Snakemake: Validate CSV format for multiplex input data May 20, 2019
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