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Add option to create MinHash LSH #24

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olgabot opened this issue Jul 3, 2019 · 0 comments

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olgabot commented Jul 3, 2019

Use datasketch (Thanks @phoenixAja!) to create either a MinHash LSH to find samples whose similarity is above a threshold, or MinHash LSH Forest to find top-k similar samples.

@phoenixAja and @neevor - may be good to integrate the extract_kmers project to extract raw k-mers to create the LSHs.

olgabot mentioned this issue

Add option to extract raw k-mers #25

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