-
Notifications
You must be signed in to change notification settings - Fork 2
Full DAP vs Cliff‐compressed DAP
Omar Ahmed edited this page Jul 25, 2024
·
2 revisions
-
First, it is important to define DAP = Document Array Profiles.
-
The DAP is used for document listing which essentially determining what document(s) ("genome (s)") contain a certain string. This is used to classify reads.
Cliffyallows users to build full DAPs as well as a compressed version which we call the cliff-compressed DAP.
-
How do I decide if I want to use a full DAP or cliff-compressed DAP?
- If you want to just do multi-class classification and you have a small number of classes, you should use the full DAP.
- If you want to do taxonomic classification and you have a large number of documents, you should use the cliff-compressed DAP.