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Sync: bring OntoPortal up-to-date with BioPortal releases 5.26.2 and onward #4

Merged
merged 136 commits into from
Jan 16, 2024
Merged

Sync: bring OntoPortal up-to-date with BioPortal releases 5.26.2 and onward #4

merged 136 commits into from
Jan 16, 2024

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syphax-bouazzouni
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syphax-bouazzouni and others added 30 commits February 11, 2022 09:31
@syphax-bouazzouni
fix get a submission metrics
faa3a99
@syphax-bouazzouni
Auto stash before merge of "upstream" and "upstream/master"
926fe1e
@syphax-bouazzouni
Merge remote-tracking branch 'upstream/master' into upstream
acbf289
@syphax-bouazzouni
add the slice get endpoint
84d100f
@syphax-bouazzouni
add the slices create endpoint
d822e95
@syphax-bouazzouni
add the slices delete endpoint
6b598b5
@syphax-bouazzouni
add the slices update endpoint
a1d37f0
@alexskr
Add caching for analytics for 24 hours.
2414aba
@syphax-bouazzouni
Merge remote-tracking branch 'upstream/master' into upstream
398a80c
@alexskr
Fix for #97. Check for ontology existence before brining attributes
6094bcd
@alexskr
Handle edge case for submission downloads which do not have UploadFil…
80e562f 
…ePath set

Fixes #98
@mdorf
Gemfile.lock update
940cc3f
@mdorf
Merge pull request #96 from ncbo/enable_expires_analytics
9f239d6 
Add client-side caching for analytics endpoint
@alexskr
Add GH workflow for capistrano deployments
8875ec5
@jvendetti
Update Gemfile.lock
1492935
@alexskr
Merge branch 'develop'
64742d1
@alexskr
fix ability to run deployment manually
3cc1358
@alexskr
Fix for deprecation notice of Rack::Attack.throttled_response
ab27dfc 
Update configuration to closely match rack attack documentation in order
to address deprecation notice:
[DEPRECATION] Rack::Attack.throttled_response is deprecated. Please use Rack::Attack.throttled_responder instead
@alexskr
Update version of actions/checkout to address deprecation notices
51b7fa3
@syphax-bouazzouni
Fix: Documentation rendering (#107)
672b29b 
* Auto stash before merge of "upstream" and "upstream/master"

* fix haml gem version
@alexskr
Merge branch 'master' into develop
a09b646
@alexskr
Update Gemfile
de5b678
@alexskr
Restore branch specifier to master
6b71451
@syphax-bouazzouni
Merge remote-tracking branch 'upstream/master' into upstream
6398e8e
@alexskr
Update capistrano sample config to include setting which branch to de…
3dc0699 
…ploy from
@mdorf
Gemfile.lock update
c41efdf
@mdorf
Gemfile.lock update
71a538c
@mdorf
Gemfile.lock update
ca338cf
@mdorf
Merge staging for release
8315162
@mdorf
Gemfile.lock update
c940625
alexskr and others added 28 commits November 7, 2023 23:09
@alexskr
Gemfile update
0402dc4
@alexskr
check existance of acroym before fetching details
f0e5dc2 
fixes #129
@alexskr
Merge pull request #130 from ncbo/fix/downloads_of_non_existing_ontol…
2c3cba8 
…ogies

fix downloads of non-existing ontologies
@alexskr
Merge branch 'develop'
2281f12
@syphax-bouazzouni
extract slice tests helper to the parent class for reusability
aa071c1
@syphax-bouazzouni
add a test for the creation of an admin user
cd8051e
@syphax-bouazzouni
enforce the security of admin user creation
5ace41c
@syphax-bouazzouni
enforce user deletion security to be admin only
6e68eaf
@alexskr
Merge pull request #131 from ontoportal-lirmm/feature/fix-user-creati…
1a62241 
…on-security

Feature: enforce user creation security
@mdorf
Gemfile.lock update
9d6a20d
@alexskr
update Gemfile.lock
ef49ce5
@alexskr
Gemfile update
a756442
@mdorf
implemented the first pass at bmir-radx/radx-project#37
1f38e8a
@mdorf
Gemfile.lock update
34a876c
@alexskr
set bundler version to be comptatible with ruby 2.7
35c41c8
@alexskr
Gemfile.lock update
14afd31
@mdorf
implemented #127 - Add API call to trigger ontology pull from remote …
f147504 
…location
@mdorf
Merge branch 'develop' of https://github.com/ncbo/ontologies_api into…
0eda478 
… develop
@mdorf
Gemfile.lock
60fee47
@mdorf
implemented a test for #127 - Add API call to trigger ontology pull f…
cd7ca2a 
…rom remote location
@mdorf
Gemfile.lock update
9d3e799
@mdorf
implemented a test for #127 - Add API call to trigger ontology pull f…
89168e9 
…rom remote location
@mdorf
implemented a test for #127 - Add API call to trigger ontology pull f…
243dba3 
…rom remote location
@alexskr
Gemfile.lock update
8566648
@alexskr
use agraph v8.0.0
955268b
@alexskr
Merge branch 'develop'
78499c3
@alexskr
Gemfile.lock update
725b2e2
@alexskr
Gemfile.lock update
7fe0bf9
@syphax-bouazzouni syphax-bouazzouni merged commit 424079c into ontoportal:master Jan 16, 2024
2 checks passed
@syphax-bouazzouni syphax-bouazzouni mentioned this pull request Jan 16, 2024
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4 participants
@syphax-bouazzouni @alexskr @mdorf @jvendetti