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Sync: bring OntoPortal up-to-date with BioPortal releases 6.13.2 and onward #17

Merged
merged 67 commits into from
Jan 16, 2024
Merged

Sync: bring OntoPortal up-to-date with BioPortal releases 6.13.2 and onward #17

merged 67 commits into from
Jan 16, 2024

Commits on Jun 13, 2023

  1. Bump bootstrap from 4.1.0 to 5.2.3

    @jvendetti
    jvendetti committed Jun 13, 2023
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  2. Refactor home page cards

    @jvendetti
    jvendetti committed Jun 13, 2023
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  3. Refactor top navigation bar

    @jvendetti
    jvendetti committed Jun 13, 2023
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  4. Fix close buttons on dismissible alerts

    @jvendetti
    jvendetti committed Jun 13, 2023
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  5. Refactor sticky footer code

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    jvendetti committed Jun 13, 2023
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Commits on Jul 26, 2023

  1. Merge branch 'master' into bootstrap-5

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    jvendetti committed Jul 26, 2023
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Commits on Jul 29, 2023

  1. Repair Admin tabbed interface

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    jvendetti committed Jul 29, 2023
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Commits on Aug 11, 2023

  1. Merge branch 'master' into bootstrap-5

    @jvendetti
    jvendetti committed Aug 11, 2023
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Commits on Aug 26, 2023

  1. Refactor form to fix spacing issues

    @jvendetti
    jvendetti committed Aug 26, 2023
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  2. Remove unused styles

    @jvendetti
    jvendetti committed Aug 26, 2023
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Commits on Aug 28, 2023

  1. Remove unnecessary nested fluid container

    @jvendetti
    jvendetti committed Aug 28, 2023
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  2. Refactor form to fix spacing issues

    @jvendetti
    jvendetti committed Aug 28, 2023
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  3. Fix alignment issue with annotator plus spinner

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    jvendetti committed Aug 28, 2023
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Commits on Aug 31, 2023

  1. Fix broken tabbed navigation for ontology tabs

    @jvendetti
    jvendetti committed Aug 31, 2023
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  2. Remove text decoration in the ontology info bar

    @jvendetti
    jvendetti committed Aug 31, 2023
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Commits on Sep 5, 2023

  1. Clean up display of ontology information buttons

    @jvendetti
    jvendetti committed Sep 5, 2023
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  2. Restore bold font in ontology metadata cards

    @jvendetti
    jvendetti committed Sep 5, 2023
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  3. Restore bold font for submissions header

    @jvendetti
    jvendetti committed Sep 5, 2023
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  4. Remove anchor text decoration for metadata cards

    @jvendetti
    jvendetti committed Sep 5, 2023
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  5. Restore border at the top of the submissions table

    @jvendetti
    jvendetti committed Sep 5, 2023
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  6. Remove bottom border from show more subs cell

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    jvendetti committed Sep 5, 2023
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Commits on Sep 6, 2023

  1. Restore top borders to details and metrics tables

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    jvendetti committed Sep 6, 2023
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Commits on Sep 7, 2023

  1. Fix add proposal dropdown button

    @jvendetti
    jvendetti committed Sep 7, 2023
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  2. Fix class permalink dialog

    @jvendetti
    jvendetti committed Sep 7, 2023
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  3. Fix create new mapping dialog

    @jvendetti
    jvendetti committed Sep 7, 2023
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Commits on Sep 8, 2023

  1. Fix add and remove synonym dialogs

    @jvendetti
    jvendetti committed Sep 8, 2023
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  2. Adjust buttons on create mapping dialog

    @jvendetti
    jvendetti committed Sep 8, 2023
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Commits on Sep 9, 2023

  1. Merge branch 'master' into bootstrap-5

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    jvendetti committed Sep 9, 2023
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Commits on Sep 12, 2023

  1. Refactor create new mapping form

    @jvendetti
    jvendetti committed Sep 12, 2023
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Commits on Sep 15, 2023

  1. Merge branch 'master' into bootstrap-5

    @jvendetti
    jvendetti committed Sep 15, 2023
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Commits on Sep 18, 2023

  1. Add back platforms overwritten during merge

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    jvendetti committed Sep 18, 2023
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Commits on Oct 18, 2023

  1. Refactor horizontal form to fix spacing issues

    @jvendetti
    jvendetti committed Oct 18, 2023
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  2. Restore padding in class details pane

    @jvendetti
    jvendetti committed Oct 18, 2023
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  3. Refactor class search form to fix spacing issues

    @jvendetti
    jvendetti committed Oct 18, 2023
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Commits on Oct 19, 2023

  1. Restore appearance of search links

    @jvendetti
    jvendetti committed Oct 19, 2023
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Commits on Oct 24, 2023

  1. Restore left alignment in ontology column

    @jvendetti
    jvendetti committed Oct 24, 2023
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  2. add download link for OntoPortal Virtual Appliance v3.2.1

    @alexskr
    alexskr committed Oct 24, 2023
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  3. Merge pull request #291 from ncbo/ontoportal_appliance_v3.2.1 

    add download link for OntoPortal Virtual Appliance v3.2.1
    @jvendetti
    jvendetti authored Oct 24, 2023
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  4. Restore link appearance in ontology column

    @jvendetti
    jvendetti committed Oct 24, 2023
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Commits on Nov 11, 2023

  1. Refactor form to fix spacing and alignment issues

    @jvendetti
    jvendetti committed Nov 11, 2023
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Commits on Nov 13, 2023

  1. Fix footer layout and presentation issues

    @jvendetti
    jvendetti committed Nov 13, 2023
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  2. Remove text-decoration for ontology visits 

    Also prevent wrapping of column header text
    @jvendetti
    jvendetti committed Nov 13, 2023
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  3. Fix node obsoletion form

    @jvendetti
    jvendetti committed Nov 13, 2023
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  4. Fix node rename form

    @jvendetti
    jvendetti committed Nov 13, 2023
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  5. jQuery toggle no longer needed

    @jvendetti
    jvendetti committed Nov 13, 2023
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  6. Fix create and remove synonym dialog forms

    @jvendetti
    jvendetti committed Nov 13, 2023
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Commits on Nov 14, 2023

  1. Fix jump to input group

    @jvendetti
    jvendetti committed Nov 14, 2023
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  2. Remove text decoration for details and mappings

    @jvendetti
    jvendetti committed Nov 14, 2023
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  3. Replace Uglifier with Terser 

    Fixes Uglifier::Error that prevents asset precompilation
    @jvendetti
    jvendetti committed Nov 14, 2023
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  4. Pin graphql gem to less than 2.1

    @jvendetti
    jvendetti committed Nov 14, 2023
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Commits on Nov 15, 2023

  1. Pin base64 gem to 0.1.0 

    See #293
    @jvendetti
    jvendetti committed Nov 15, 2023
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  2. Remove text decoration from ontology list

    @jvendetti
    jvendetti committed Nov 15, 2023
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  3. Restore space underneath filter text box

    @jvendetti
    jvendetti committed Nov 15, 2023
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Commits on Nov 16, 2023

  1. Add download link for Virtual Appliance v3.2.2

    @alexskr
    alexskr committed Nov 16, 2023
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  2. Merge pull request #294 from ncbo/add_ontoportal_appliance_v3.2.2_link 

    Add download link for Virtual Appliance v3.2.2
    @jvendetti
    jvendetti authored Nov 16, 2023
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  3. Merge pull request #267 from ncbo/bootstrap-5 

    Upgrade to Bootstrap 5
    @jvendetti
    jvendetti authored Nov 16, 2023
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Commits on Nov 20, 2023

  1. Use regular dropdown instead of split type

    @jvendetti
    jvendetti committed Nov 20, 2023
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  2. Display site notices above loading splash div 

    Prevents a jumpy page appearance when the ontologies loading message is displayed
    @jvendetti
    jvendetti committed Nov 20, 2023
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  3. Update Gemfile.lock

    @jvendetti
    jvendetti committed Nov 20, 2023
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Commits on Nov 21, 2023

  1. Merge pull request #295 from ncbo/bootstrap5-tweaks 

    Bootstrap 5 tweaks
    @jvendetti
    jvendetti authored Nov 21, 2023
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Commits on Nov 29, 2023

  1. Adjust font size for autocomplete results list 

    Resolves #296
    @jvendetti
    jvendetti committed Nov 29, 2023
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Commits on Dec 12, 2023

  1. Fix login requirement for notes email subscriptions 

    The sanitize method was stripping the href attribute. See #298.
    @jvendetti
    jvendetti committed Dec 12, 2023
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Commits on Dec 13, 2023

  1. Encode user ID portion of subscriptions params 

    Resolves #300
    @jvendetti
    jvendetti committed Dec 13, 2023
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  2. Fix Uncaught TypeError on notes emails subscribe 

    See #298
    @jvendetti
    jvendetti committed Dec 13, 2023
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  3. Fix some RuboCop warnings

    @jvendetti
    jvendetti committed Dec 13, 2023
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Commits on Dec 15, 2023

  1. Refactor subscribed_to_ontology? method 

    Account for the case where the user parameter doesn't have the ontology attribute loaded on the list of associated subscription objects
    @jvendetti
    jvendetti committed Dec 15, 2023
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  2. Merge pull request #301 from ncbo/bugfix/notes-subscriptions 

    Fix various issues with notes emails subscriptions
    @jvendetti
    jvendetti authored Dec 15, 2023
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