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data-post-processing

code for post processing transcribed data from the McGill DRAW project

This repository contains code was started in summer 2022 by Nathan Leuranger and Victoria Slonosky to post-process presssure data from the McGill DRAW transcription project https://draw.geog.mcgill.ca/.

Deployment

There is a docker image containing the python code for this project. The packages are released and tagged. To get the latest release you can pull the docker image from the github repository using the commend:

docker pull ghcr.io/open-data-rescue/data-post-processing:latest

If you need a specific version replaces the latest tag with the version number.

There are 5 environment variables used to connect the code to the Draw MySQL database. These are:

Variable Description Example Value
DRAW_local_db_user The user name to connect to the db
DRAW_local_db_pass The user's DB password
DRAW_local_db_name The name of the DB schema draw_production
DRAW_db_host The host that the DB is running on localhost
DRAW_db_port The TCP port to connect (defaults tp 3306 if not set) 3306

To run the data processing python script after you have pull the image use

  docker run \
    --env DRAW_local_db_user=draw_user \
    --env DRAW_local_db_pass=draw_user_password \
    --env DRAW_local_db_name=climate_data_rescue \
    --env DRAW_db_host=localhost \
    --env DRAW_db_port=3306 \
    -it --rm --network host \
    --mount type=bind,source="./SEF",target=/opt/draw-post-processing/SEF \
    ghcr.io/open-data-rescue/data-post-processing

NOTES:

The SEF files will be put in the directory you specify within the mount command. Change the ./SEF to a directory where you would like the SEF files to be placed.

Also set the DB user, password and name to match what you need to connect to you database.