Merge branch 'dev'

.github/ISSUE_TEMPLATE/config.yml

@@ -0,0 +1,16 @@
+about: Manage your project's issue templates
+config:
+  blank_issues_enabled: false
+  contact_links:
+    - name: OpenProphetDB Team
+      url: https://www.prophetdb.org/contact/
+      about: Please ask and answer questions here.
+  issue_templates:
+    - name: Bug report
+      about: Create a report to help us improve
+      labels: bug
+      assignees: yjcyxky@163.com
+    - name: Feature request
+      about: Suggest an idea for this project
+      labels: enhancement
+      assignees: yjcyxky@163.com

.github/workflows/publish-bin.yml

@@ -1,52 +1,60 @@
 name: Build and Release Binaries
 
 on:
+  push:
+    branches:
+      - dev
   workflow_dispatch:
 
 jobs:
   build:
-    strategy:
-      matrix:
-        os: [macos-latest, ubuntu-latest]
-        include:
-          - os: macos-latest
-            arch: [amd64, arm64]
-          - os: ubuntu-latest
-            arch: [amd64, arm64]
-    runs-on: ${{ matrix.os }}
+    runs-on: ubuntu-latest
 
     steps:
     - uses: actions/checkout@v2
+
+    - name: Determine tag or commit for release name
+      id: release_name
+      run: |
+        if [[ $GITHUB_REF == refs/tags/* ]]; then
+          echo "::set-output name=tag::${GITHUB_REF#refs/tags/}"
+        else
+          echo "::set-output name=tag::$(git rev-parse --short HEAD)"
+        fi
+      shell: bash
 
     - name: Set up Node.js
       uses: actions/setup-node@v2
       with:
-        node-version: '16.13.1'
-
-    - name: Install Rust toolchain
-      uses: actions-rs/toolchain@v1
-      with:
-        profile: minimal
-        toolchain: stable
-        override: true
+        node-version: '16.20.2'
 
-    - name: Build project
+    - name: Build frontend
       run: |
         printf "Building studio based on openapi...\n"
         mkdir -p assets
-        cd studio && yarn && yarn openapi || true
-        cd studio && yarn build:embed && cd ..
-        cargo build --release
+        git submodule update --init --recursive
+        cd studio && yarn --ignore-engines && yarn openapi || true 
+        yarn build:embed
+
+    - name: Build with messense/rust-musl-cross
+      run: |
+        docker run --rm -v "${{ github.workspace }}:/home/rust/src" messense/rust-musl-cross:x86_64-musl cargo build --release --target x86_64-unknown-linux-musl
+        find ./target -type f -name "biomedgps*" -exec ls -l {} \;
+
+    - name: Build with messense/rust-musl-cross
+      run: |
+        docker run --rm -v "${{ github.workspace }}:/home/rust/src" messense/rust-musl-cross:aarch64-musl cargo build --release --target aarch64-unknown-linux-musl
+        find ./target -type f -name "biomedgps*" -exec ls -l {} \;
 
     - name: Create Release
       id: create_release
       uses: actions/create-release@v1
       env:
         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       with:
-        tag_name: ${{ github.ref }}
-        release_name: Release ${{ github.ref }}
-        draft: false
+        tag_name: ${{ steps.release_name.outputs.tag }}
+        release_name: Release ${{ steps.release_name.outputs.tag }}
+        draft: ${{ github.event_name != 'workflow_dispatch' }}
         prerelease: false
 
     - name: Upload Release Asset (biomedgps)
@@ -55,8 +63,28 @@ jobs:
         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       with:
         upload_url: ${{ steps.create_release.outputs.upload_url }}
-        asset_path: ./target/release/biomedgps-${{ matrix.os }}-${{ matrix.arch }}
-        asset_name: biomedgps-${{ matrix.os }}-${{ matrix.arch }}
+        asset_path: ./target/x86_64-unknown-linux-musl/release/biomedgps
+        asset_name: biomedgps-x86_64-unknown-linux-musl
+        asset_content_type: application/octet-stream
+
+    - name: Upload Release Asset (biomedgps-cli)
+      uses: actions/upload-release-asset@v1
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      with:
+        upload_url: ${{ steps.create_release.outputs.upload_url }}
+        asset_path: ./target/x86_64-unknown-linux-musl/release/biomedgps-cli
+        asset_name: biomedgps-cli-x86_64-unknown-linux-musl
+        asset_content_type: application/octet-stream
+
+    - name: Upload Release Asset (biomedgps)
+      uses: actions/upload-release-asset@v1
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+      with:
+        upload_url: ${{ steps.create_release.outputs.upload_url }}
+        asset_path: ./target/aarch64-unknown-linux-musl/release/biomedgps
+        asset_name: biomedgps-aarch64-unknown-linux-musl
         asset_content_type: application/octet-stream
 
     - name: Upload Release Asset (biomedgps-cli)
@@ -65,6 +93,6 @@ jobs:
         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       with:
         upload_url: ${{ steps.create_release.outputs.upload_url }}
-        asset_path: ./target/release/biomedgps-cli-${{ matrix.os }}-${{ matrix.arch }}
-        asset_name: biomedgps-cli-${{ matrix.os }}-${{ matrix.arch }}
+        asset_path: ./target/aarch64-unknown-linux-musl/release/biomedgps-cli
+        asset_name: biomedgps-cli-aarch64-unknown-linux-musl
         asset_content_type: application/octet-stream

Dockerfile

@@ -24,7 +24,7 @@ RUN wget -O miniconda.sh https://repo.anaconda.com/miniconda/Miniconda3-latest-L
     bash miniconda.sh -b -p /opt/miniconda && \
     rm miniconda.sh
 RUN conda create -n biomedgps nodejs=16.13.1
-RUN npm install -g yarn
+RUN npm install -g yarn@1.22.19
 
 # Add the rest of the source
 ADD . .

studio/.eslintrc.js

@@ -0,0 +1,3 @@
+module.exports = {
+  extends: require.resolve('@umijs/max/eslint'),
+};

studio/.gitignore

@@ -0,0 +1,13 @@
+/node_modules
+/.env.local
+/.umirc.local.ts
+/config/config.local.ts
+/src/.umi
+/src/.umi-production
+/src/.umi-test
+/.umi
+/.umi-production
+/.umi-test
+/dist
+/.mfsu
+.swc

studio/.lintstagedrc

@@ -0,0 +1,17 @@
+{
+  "*.{md,json}": [
+    "prettier --cache --write"
+  ],
+  "*.{js,jsx}": [
+    "max lint --fix --eslint-only",
+    "prettier --cache --write"
+  ],
+  "*.{css,less}": [
+    "max lint --fix --stylelint-only",
+    "prettier --cache --write"
+  ],
+  "*.ts?(x)": [
+    "max lint --fix --eslint-only",
+    "prettier --cache --parser=typescript --write"
+  ]
+}

studio/.npmrc

@@ -0,0 +1,2 @@
+registry=https://registry.npmjs.com/
+

studio/.prettierignore

@@ -0,0 +1,3 @@
+node_modules
+.umi
+.umi-production

studio/.prettierrc

@@ -0,0 +1,8 @@
+{
+  "printWidth": 80,
+  "singleQuote": true,
+  "trailingComma": "all",
+  "proseWrap": "never",
+  "overrides": [{ "files": ".prettierrc", "options": { "parser": "json" } }],
+  "plugins": ["prettier-plugin-organize-imports", "prettier-plugin-packagejson"]
+}

studio/.stylelintrc.js

@@ -0,0 +1,3 @@
+module.exports = {
+  extends: require.resolve('@umijs/max/stylelint'),
+};

studio/README.md

@@ -0,0 +1,3 @@
+# README
+
+`@umijs/max` 模板项目，更多功能参考 [Umi Max 简介](https://umijs.org/docs/max/introduce)

studio/config/config.dev.ts

@@ -0,0 +1,15 @@
+// https://umijs.org/config/
+import { defineConfig } from 'umi';
+
+export default defineConfig({
+  plugins: [
+    // https://github.com/zthxxx/react-dev-inspector
+    'react-dev-inspector/plugins/umi/react-inspector',
+  ],
+  // https://github.com/zthxxx/react-dev-inspector#inspector-loader-props
+  inspectorConfig: {
+    exclude: [],
+    babelPlugins: [],
+    babelOptions: {},
+  },
+});

studio/config/config.embed.ts

@@ -0,0 +1,16 @@
+// https://umijs.org/config/
+import { defineConfig } from 'umi';
+
+export default defineConfig({
+  outputPath: '../assets',
+  publicPath: '/assets/',
+  history: {
+    type: 'hash',
+  },
+  codeSplitting: {
+    jsStrategy: 'granularChunks'
+  },
+  esbuildMinifyIIFE: true,
+  favicons: ['/assets/gene.png'],
+  proxy: undefined,
+});

studio/config/config.ts

@@ -0,0 +1,82 @@
+// https://umijs.org/config/
+import { defineConfig } from 'umi';
+import path from 'path';
+
+import proxy from './proxy';
+import { routes as defaultRoutes } from './routes';
+
+const isDev = process.env.NODE_ENV === 'development';
+const isStatic = isDev ? true : (process.env.UMI_APP_IS_STATIC ? process.env.UMI_APP_IS_STATIC : false);
+
+export default defineConfig({
+  hash: true,
+  history: {
+    type: 'hash',
+  },
+  publicPath: '/',
+  antd: {},
+  access: {},
+  model: {},
+  initialState: {},
+  request: {},
+  // plugins: ['@umijs/plugins/dist/request'],
+  npmClient: 'yarn',
+  dva: {},
+  chainWebpack: (config: any) => {
+    config.merge({
+      resolve: {
+        fallback: {
+          'perf_hooks': false,
+        }
+      }
+    });
+
+    // https://github.com/webpack/webpack/discussions/13585
+    config.resolve.alias.set('perf_hooks', path.resolve(__dirname, 'perf_hooks.ts'));
+    // console.log("config.resolve.alias", config.resolve.alias);
+  },
+  define: {
+    // Whether the frontend is separated from the backend.
+    isStatic: isStatic,
+  },
+  layout: {
+    // https://umijs.org/docs/max/layout-menu
+    locale: false,
+  },
+  targets: {
+    chrome: 80
+  },
+  // umi routes: https://umijs.org/docs/routing
+  // We load routes dynamically from the config file.
+  routes: defaultRoutes,
+  // Theme for antd: https://ant.design/docs/react/customize-theme-cn
+  theme: {
+    // 如果不想要 configProvide 动态设置主题需要把这个设置为 default
+    // 只有设置为 variable， 才能使用 configProvide 动态设置主色调
+    // https://ant.design/docs/react/customize-theme-variable-cn
+    'root-entry-name': 'variable',
+  },
+  title: false,
+  ignoreMomentLocale: true,
+  // proxy: proxy[REACT_APP_ENV || 'dev'],
+  proxy: proxy['dev'],
+  manifest: {
+    basePath: '/',
+  },
+  // Fast Refresh 热更新
+  fastRefresh: true,
+  // https://pro.ant.design/docs/openapi
+  // openAPI: [
+  //   {
+  //     requestLibPath: "import { request } from 'umi'",
+  //     // schemaPath: join(__dirname, 'api.json'),
+  //     // You may need to open the apifox before running `yarn openapi`.
+  //     // schemaPath: "http://127.0.0.1:4523/export/openapi?projectId=1645899&version=3.1",
+  //     // TODO: ApiFox cannot import the spec correctly.
+  //     schemaPath: "http://localhost:8000/spec",
+  //     projectName: "swagger",
+  //     mock: false,
+  //   }
+  // ],
+  mfsu: {}
+});