-
Notifications
You must be signed in to change notification settings - Fork 217
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
f8d774a
commit 8debb57
Showing
1 changed file
with
42 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,42 @@ | ||
# Release notes for cobrapy 0.14.0 | ||
|
||
## New features | ||
|
||
* Adding boundary reactions is now much more flexible and accepts | ||
user-defined identifiers. | ||
* It is now possible to run FVA and loopless FVA in parallel. | ||
* Some utilities and an example of how to perform static optimization dynamic | ||
FBA. | ||
* There now is a global configuration singleton `cobra.Configuration()` that | ||
can be used to set default bounds for newly created reactions and set a | ||
default solver for all newly created or parsed models. | ||
* Setting a time limit on solvers now still allows users to retrieve the flux | ||
distribution at the point of time out. | ||
|
||
## Fixes | ||
|
||
* Infinity values are now properly handled and passed down to optlang. | ||
* Properly update the model objective on leaving a model context. | ||
* New metabolites are now included in the gapfilling process. | ||
|
||
## Deprecated features | ||
|
||
* We are deprecating a special case of lower and upper bound behavior. Please | ||
read more about it in #793 and let us know what you think. | ||
|
||
## Backwards incompatible changes | ||
|
||
* The old solver interfaces that were deprecated for a long time have been | ||
removed. | ||
|
||
## Documentation | ||
|
||
* Better documentation for the minimal medium functionality. | ||
* Additions to the contribution guidelines. | ||
|
||
## Internal | ||
|
||
* Improve indexing for `find_blocked_reactions`. | ||
* Adjust the test suite for pytest 4.0 and update the configuration. | ||
* The module structure and corresponding tests are broken up and re-organized. | ||
|