From 8debb57fe1457ca090597b03231acb7fb004d73a Mon Sep 17 00:00:00 2001 From: "Moritz E. Beber" Date: Wed, 5 Dec 2018 12:46:34 +0100 Subject: [PATCH] chore: create release notes --- release-notes/0.14.0.md | 42 +++++++++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) create mode 100644 release-notes/0.14.0.md diff --git a/release-notes/0.14.0.md b/release-notes/0.14.0.md new file mode 100644 index 000000000..ace201c5f --- /dev/null +++ b/release-notes/0.14.0.md @@ -0,0 +1,42 @@ +# Release notes for cobrapy 0.14.0 + +## New features + +* Adding boundary reactions is now much more flexible and accepts + user-defined identifiers. +* It is now possible to run FVA and loopless FVA in parallel. +* Some utilities and an example of how to perform static optimization dynamic + FBA. +* There now is a global configuration singleton `cobra.Configuration()` that + can be used to set default bounds for newly created reactions and set a + default solver for all newly created or parsed models. +* Setting a time limit on solvers now still allows users to retrieve the flux + distribution at the point of time out. + +## Fixes + +* Infinity values are now properly handled and passed down to optlang. +* Properly update the model objective on leaving a model context. +* New metabolites are now included in the gapfilling process. + +## Deprecated features + +* We are deprecating a special case of lower and upper bound behavior. Please + read more about it in #793 and let us know what you think. + +## Backwards incompatible changes + +* The old solver interfaces that were deprecated for a long time have been + removed. + +## Documentation + +* Better documentation for the minimal medium functionality. +* Additions to the contribution guidelines. + +## Internal + +* Improve indexing for `find_blocked_reactions`. +* Adjust the test suite for pytest 4.0 and update the configuration. +* The module structure and corresponding tests are broken up and re-organized. +