diff --git a/cobra/__init__.py b/cobra/__init__.py index d211b96ee..f2f548995 100644 --- a/cobra/__init__.py +++ b/cobra/__init__.py @@ -13,7 +13,7 @@ DictList, Gene, Metabolite, Model, Object, Reaction, Species) from cobra.util.version_info import show_versions -__version__ = "0.6.2" +__version__ = "0.7.0" # set the warning format to be prettier and fit on one line _cobra_path = _dirname(_abspath(__file__)) diff --git a/release-notes/0.7.0.md b/release-notes/0.7.0.md new file mode 100644 index 000000000..aa0a67e1b --- /dev/null +++ b/release-notes/0.7.0.md @@ -0,0 +1,23 @@ +# Release notes for cobrapy 0.7.0 + +## Fixes + +- `cobra.flux_analysis.reaction.assess` + [was broken](https://github.com/opencobra/cobrapy/issues/537) + following the release of 0.6.0 and has now been fixed (and now with + unit tests). +- `production_envelope` failed when model C-source was formulated as + -> x instead of x <-. Fixed added option to guess the C-source by + taking the medium reaction with the highest input C flux. +- `model_to_pymatbridge` needs scipy and that's correctly handled now. + +## New features +- `flux_variability_analysis` now has the `pfba_factor` parameter + which enables the inclusion of a constraint on the max sum of + absolute fluxes when doing FVA. + +## Deprecated features + +- `cobra.flux_analysis.reaction.assess_{precursors,products}` were + essentially copies of each other and have been merged to + `cobra.flux_analysis.reaction.assess_component` diff --git a/release-notes/next-release.md b/release-notes/next-release.md index 554dfd629..a5451d7c2 100644 --- a/release-notes/next-release.md +++ b/release-notes/next-release.md @@ -2,22 +2,7 @@ ## Fixes -- `cobra.flux_analysis.reaction.assess` - [was broken](https://github.com/opencobra/cobrapy/issues/537) - following the release of 0.6.0 and has now been fixed (and now with - unit tests). -- `production_envelope` failed when model C-source was formulated as - -> x instead of x <-. Fixed added option to guess the C-source by - taking the medium reaction with the highest input C flux. -- `model_to_pymatbridge` needs scipy and that's correctly handled now. - ## New features -- `flux_variability_analysis` now has the `pfba_factor` parameter - which enables the inclusion of a constraint on the max sum of - absolute fluxes when doing FVA. ## Deprecated features -- `cobra.flux_analysis.reaction.assess_{precursors,products}` were - essentially copies of each other and have been merged to - `cobra.flux_analysis.reaction.assess_component` diff --git a/setup.cfg b/setup.cfg index 8c6b82e81..6554b0b37 100644 --- a/setup.cfg +++ b/setup.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.6.2 +current_version = 0.7.0 commit = True tag = True parse = (?P\d+) diff --git a/setup.py b/setup.py index 851a344e9..db8bafbcc 100644 --- a/setup.py +++ b/setup.py @@ -144,7 +144,7 @@ def build_extension(self, ext): setup( name="cobra", - version="0.6.2", + version="0.7.0", packages=find_packages(), setup_requires=setup_requirements, install_requires=["future", "swiglpk", "optlang>=1.1.5", "ruamel.yaml<0.15",