Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Questions about training the model #2

Open
SillenceHu opened this issue Jul 5, 2023 · 13 comments
Open

Questions about training the model #2

SillenceHu opened this issue Jul 5, 2023 · 13 comments

Comments

@SillenceHu
Copy link

Can you provide the code for training the model

@LWHYC
Copy link
Collaborator

LWHYC commented Jul 6, 2023

Hi, SillenceHu

We are currently in the process of tidying up our training code and will publish it when it's ready. Meanwhile, our existing model is fully functional and capable of localizing any position in 3D CT scans, so you are welcome to use it as is.
We appreciate your patience and understanding. Please feel free to reach out if you have further questions or need any assistance.

@LWHYC LWHYC closed this as completed Jul 8, 2023
@LWHYC LWHYC reopened this Jul 19, 2023
@jumbojing
Copy link

同求!

@nanshanvv
Copy link

Hi, SillenceHu

We are currently in the process of tidying up our training code and will publish it when it's ready. Meanwhile, our existing model is fully functional and capable of localizing any position in 3D CT scans, so you are welcome to use it as is. We appreciate your patience and understanding. Please feel free to reach out if you have further questions or need any assistance.

Looking forward to the release of the training code

@TinySpins
Copy link

Looking forward to your release of training code.
Do you have any plans to try to train on MRI data as well?

@LWHYC
Copy link
Collaborator

LWHYC commented Sep 25, 2023

Looking forward to your release of training code. Do you have any plans to try to train on MRI data as well?
Hi,

Thank you for your interest in our work.

We're currently in the process of finalizing our article for submission. We plan to release the training code within the next month. However, we will be updating the inference code sooner to ensure faster localization and more accurate segmentation results.

As for MRI data, collecting it is indeed challenging. We're actively gathering data in an effort to train MedLSAM-V2, aiming for cross-modality arbitrary localization capabilities.

@NisaHameed
Copy link

Hi

Is there any chance that the work is adoptable to 3D microscopic images?

@LWHYC
Copy link
Collaborator

LWHYC commented Oct 19, 2023

Hi

Is there any chance that the work is adoptable to 3D microscopic images?

Sorry for my lack of expertise in 3D microscopic images. Our work, MedLSAM, is successful on 3D medical data based on two assumptions:

  1. Relative Distance Regression: The spatial structure distribution of different individuals' bodies is relatively similar, so they can be projected into the same coordinate system.
  2. Multi Scale Similarity: Images with locally similar pixel distributions correspond to the same region in different individuals.

If your 3D microscopic images also meet either of the above assumptions, I believe it may be adoptable. However, further adjustments and experiments would be required to confirm its applicability.

@25benjaminli
Copy link

@LWHYC is the code for training available?

@LWHYC
Copy link
Collaborator

LWHYC commented Jan 9, 2024

@LWHYC is the code for training available?

Hi,
Sorry for the late reply. We have added the training code here: https://github.com/openmedlab/MedLSAM/tree/main/train

@LWHYC
Copy link
Collaborator

LWHYC commented Jan 9, 2024

同求!

Hi,
Sorry for the late reply. We have added the training code here: https://github.com/openmedlab/MedLSAM/tree/main/train

@LWHYC
Copy link
Collaborator

LWHYC commented Jan 9, 2024

Can you provide the code for training the model

Hi,
Sorry for the late reply. We have added the training code here: https://github.com/openmedlab/MedLSAM/tree/main/train

@LWHYC
Copy link
Collaborator

LWHYC commented Jan 9, 2024

Hi, SillenceHu
We are currently in the process of tidying up our training code and will publish it when it's ready. Meanwhile, our existing model is fully functional and capable of localizing any position in 3D CT scans, so you are welcome to use it as is. We appreciate your patience and understanding. Please feel free to reach out if you have further questions or need any assistance.

Looking forward to the release of the training code

Hi,
Sorry for the late reply. We have added the training code here: https://github.com/openmedlab/MedLSAM/tree/main/train

@LWHYC
Copy link
Collaborator

LWHYC commented Jan 9, 2024

Looking forward to your release of training code. Do you have any plans to try to train on MRI data as well?

Hi,
Sorry for the late reply. We have added the training code here: https://github.com/openmedlab/MedLSAM/tree/main/train

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

7 participants