Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Run STAR in "two pass mode" to detect novel splice junctions #122

Open
iskandr opened this issue Sep 19, 2018 · 0 comments
Open

Run STAR in "two pass mode" to detect novel splice junctions #122

iskandr opened this issue Sep 19, 2018 · 0 comments

Comments

@iskandr
Copy link
Contributor

iskandr commented Sep 19, 2018 •
edited
Loading

Add --twopassMode Basic option to STAR (https://ycl6.gitbooks.io/rna-seq-data-analysis/mapping_with_star.html)

We might also make this optional via the config file, since two-pass mode increases RNA alignment time.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@iskandr