diff --git a/examples/parametersweep/CanonicalCircuit.py b/examples/parametersweep/CanonicalCircuit.py index f5047f3e..c3da658c 100644 --- a/examples/parametersweep/CanonicalCircuit.py +++ b/examples/parametersweep/CanonicalCircuit.py @@ -159,7 +159,7 @@ def generate(duration=1000, paramset='C'): network=new_file, duration=duration, dt='0.1', - recordTraces={'all':'*'}, + record_traces={'all':'*'}, plots2D={'DB-VB':{'x_axis':'DB/0/%s/v'%neuron_id, 'y_axis':'VB/0/%s/v'%neuron_id}}) diff --git a/examples/parametersweep/Canonical_C.json b/examples/parametersweep/Canonical_C.json index ded901ec..c6541830 100644 --- a/examples/parametersweep/Canonical_C.json +++ b/examples/parametersweep/Canonical_C.json @@ -1,6 +1,6 @@ { "Canonical_C": { - "version": "NeuroMLlite v0.3.0", + "version": "NeuroMLlite v0.5.7", "parameters": { "stim_duration": "2000ms", "stim_amp": "3.5pA", @@ -24,12 +24,12 @@ }, "input_sources": { "iclamp_0": { - "neuroml2_input": "PulseGenerator", "parameters": { "amplitude": "stim_amp", "delay": "500ms", "duration": "stim_duration" - } + }, + "neuroml2_input": "PulseGenerator" } }, "regions": { @@ -212,7 +212,7 @@ "stim": { "input_source": "iclamp_0", "population": "AVB", - "percentage": 100.0 + "percentage": 100 } } } diff --git a/examples/parametersweep/Canonical_C.net.nml b/examples/parametersweep/Canonical_C.net.nml index 2c61f2e5..c224e0fe 100644 --- a/examples/parametersweep/Canonical_C.net.nml +++ b/examples/parametersweep/Canonical_C.net.nml @@ -1,5 +1,5 @@ - - Generated by NeuroMLlite v0.3.0 + + Generated by NeuroMLlite v0.5.7 Generated network: Canonical_C Generation seed: 1234 NeuroMLlite parameters: @@ -60,28 +60,28 @@ - + - + - + - + - + - + - + diff --git a/examples/parametersweep/Canonical_X.json b/examples/parametersweep/Canonical_X.json index 9ad0cff1..a92e8750 100644 --- a/examples/parametersweep/Canonical_X.json +++ b/examples/parametersweep/Canonical_X.json @@ -1,6 +1,6 @@ { "Canonical_X": { - "version": "NeuroMLlite v0.3.0", + "version": "NeuroMLlite v0.5.7", "parameters": { "stim_duration": "250ms", "stim_amp": "1pA", @@ -24,12 +24,12 @@ }, "input_sources": { "iclamp_0": { - "neuroml2_input": "PulseGenerator", "parameters": { "amplitude": "stim_amp", "delay": "500ms", "duration": "stim_duration" - } + }, + "neuroml2_input": "PulseGenerator" } }, "regions": { @@ -146,7 +146,7 @@ "stim": { "input_source": "iclamp_0", "population": "AVB", - "percentage": 100.0 + "percentage": 100 } } } diff --git a/examples/parametersweep/Canonical_X.net.nml b/examples/parametersweep/Canonical_X.net.nml index fd09c019..bbe97693 100644 --- a/examples/parametersweep/Canonical_X.net.nml +++ b/examples/parametersweep/Canonical_X.net.nml @@ -1,5 +1,5 @@ - - Generated by NeuroMLlite v0.3.0 + + Generated by NeuroMLlite v0.5.7 Generated network: Canonical_X Generation seed: 1234 NeuroMLlite parameters: diff --git a/examples/parametersweep/IClamp_GenericMuscleCell.json b/examples/parametersweep/IClamp_GenericMuscleCell.json index 38ad3bf0..d300bdd4 100644 --- a/examples/parametersweep/IClamp_GenericMuscleCell.json +++ b/examples/parametersweep/IClamp_GenericMuscleCell.json @@ -1,11 +1,10 @@ { "IClamp_GenericMuscleCell": { - "version": "NeuroMLlite v0.3.0", - "temperature": 34.0, + "version": "NeuroMLlite v0.5.7", + "notes": "A network model: IClamp_GenericMuscleCell", "parameters": { "stim_amp": "4pA" }, - "notes": "A network model: IClamp_GenericMuscleCell", "cells": { "GenericMuscleCell": { "neuroml2_source_file": "GenericMuscleCell.cell.nml" @@ -13,12 +12,12 @@ }, "input_sources": { "iclamp_0": { - "neuroml2_input": "PulseGenerator", "parameters": { "amplitude": "stim_amp", "delay": "500ms", "duration": "2000ms" - } + }, + "neuroml2_input": "PulseGenerator" } }, "regions": { @@ -47,8 +46,9 @@ "Stim_iclamp_0": { "input_source": "iclamp_0", "population": "pop_GenericMuscleCell", - "percentage": 100.0 + "percentage": 100 } - } + }, + "temperature": 34.0 } } \ No newline at end of file diff --git a/examples/parametersweep/IClamp_GenericMuscleCell.net.nml b/examples/parametersweep/IClamp_GenericMuscleCell.net.nml index 40466fa5..cf9252b2 100644 --- a/examples/parametersweep/IClamp_GenericMuscleCell.net.nml +++ b/examples/parametersweep/IClamp_GenericMuscleCell.net.nml @@ -1,5 +1,5 @@ - - Generated by NeuroMLlite v0.3.0 + + Generated by NeuroMLlite v0.5.7 Generated network: IClamp_GenericMuscleCell Generation seed: 1234 NeuroMLlite parameters: diff --git a/examples/parametersweep/IClamp_GenericNeuronCell.json b/examples/parametersweep/IClamp_GenericNeuronCell.json index c3240552..f845b88d 100644 --- a/examples/parametersweep/IClamp_GenericNeuronCell.json +++ b/examples/parametersweep/IClamp_GenericNeuronCell.json @@ -1,11 +1,10 @@ { "IClamp_GenericNeuronCell": { - "version": "NeuroMLlite v0.3.0", - "temperature": 34.0, + "version": "NeuroMLlite v0.5.7", + "notes": "A network model: IClamp_GenericNeuronCell", "parameters": { "stim_amp": "4pA" }, - "notes": "A network model: IClamp_GenericNeuronCell", "cells": { "GenericNeuronCell": { "neuroml2_source_file": "GenericNeuronCell.cell.nml" @@ -13,12 +12,12 @@ }, "input_sources": { "iclamp_0": { - "neuroml2_input": "PulseGenerator", "parameters": { "amplitude": "stim_amp", "delay": "500ms", "duration": "2000ms" - } + }, + "neuroml2_input": "PulseGenerator" } }, "regions": { @@ -47,8 +46,9 @@ "Stim_iclamp_0": { "input_source": "iclamp_0", "population": "pop_GenericNeuronCell", - "percentage": 100.0 + "percentage": 100 } - } + }, + "temperature": 34.0 } } \ No newline at end of file diff --git a/examples/parametersweep/IClamp_GenericNeuronCell.net.nml b/examples/parametersweep/IClamp_GenericNeuronCell.net.nml index 64eab52d..d336088f 100644 --- a/examples/parametersweep/IClamp_GenericNeuronCell.net.nml +++ b/examples/parametersweep/IClamp_GenericNeuronCell.net.nml @@ -1,5 +1,5 @@ - - Generated by NeuroMLlite v0.3.0 + + Generated by NeuroMLlite v0.5.7 Generated network: IClamp_GenericNeuronCell Generation seed: 1234 NeuroMLlite parameters: diff --git a/examples/parametersweep/SimCanonical_C.json b/examples/parametersweep/SimCanonical_C.json index 6fd4f186..5e58abdf 100644 --- a/examples/parametersweep/SimCanonical_C.json +++ b/examples/parametersweep/SimCanonical_C.json @@ -1,10 +1,10 @@ { "SimCanonical_C": { - "version": "NeuroMLlite v0.3.0", + "version": "NeuroMLlite v0.5.7", "network": "Canonical_C.json", "duration": 3000.0, "dt": 0.1, - "recordTraces": { + "record_traces": { "all": "*" }, "plots2D": { diff --git a/examples/parametersweep/SimCanonical_X.json b/examples/parametersweep/SimCanonical_X.json index 55bcdc79..27519739 100644 --- a/examples/parametersweep/SimCanonical_X.json +++ b/examples/parametersweep/SimCanonical_X.json @@ -1,10 +1,10 @@ { "SimCanonical_X": { - "version": "NeuroMLlite v0.3.0", + "version": "NeuroMLlite v0.5.7", "network": "Canonical_X.json", "duration": 3000.0, "dt": 0.1, - "recordTraces": { + "record_traces": { "all": "*" }, "plots2D": { diff --git a/examples/parametersweep/Sim_IClamp_GenericMuscleCell.json b/examples/parametersweep/Sim_IClamp_GenericMuscleCell.json index 031f47ab..fd609e75 100644 --- a/examples/parametersweep/Sim_IClamp_GenericMuscleCell.json +++ b/examples/parametersweep/Sim_IClamp_GenericMuscleCell.json @@ -1,11 +1,11 @@ { "Sim_IClamp_GenericMuscleCell": { - "version": "NeuroMLlite v0.3.0", + "version": "NeuroMLlite v0.5.7", "network": "IClamp_GenericMuscleCell.json", "duration": 3000.0, "dt": 0.025, "seed": 12345, - "recordTraces": { + "record_traces": { "all": "*" } } diff --git a/examples/parametersweep/Sim_IClamp_GenericNeuronCell.json b/examples/parametersweep/Sim_IClamp_GenericNeuronCell.json index 31c69853..4a476255 100644 --- a/examples/parametersweep/Sim_IClamp_GenericNeuronCell.json +++ b/examples/parametersweep/Sim_IClamp_GenericNeuronCell.json @@ -1,11 +1,11 @@ { "Sim_IClamp_GenericNeuronCell": { - "version": "NeuroMLlite v0.3.0", + "version": "NeuroMLlite v0.5.7", "network": "IClamp_GenericNeuronCell.json", "duration": 3000.0, "dt": 0.025, "seed": 12345, - "recordTraces": { + "record_traces": { "all": "*" } }