Skip to content

Commit

Permalink
Tweak syn values
Browse files Browse the repository at this point in the history
  • Loading branch information
@pgleeson
pgleeson committed Jul 27, 2018
1 parent 4f17c1f commit e391320
Show file tree
Hide file tree
Showing 17 changed files with 48 additions and 48 deletions.
2 changes: 1 addition & 1 deletion c302/c302_Syns.py
View file
Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@ def setup(parameter_set,
exec('from parameters_%s import ParameterisedModel'%parameter_set, globals())
params = ParameterisedModel()

stim_amplitudes = ["2pA","5pA"]
stim_amplitudes = ["1pA","5pA"]
duration = (len(stim_amplitudes))*1800

params.set_bioparameter("unphysiological_offset_current_del", "50 ms", "Testing IClamp", "0")
Expand Down
6 changes: 3 additions & 3 deletions examples/c302_A_Syns.net.nml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -50,9 +50,9 @@ Parameters and setting used to generate this network:
<iafCell id="generic_muscle_iaf_cell" leakReversal="-50mV" thresh="-30mV" reset="-50mV" C="3pF" leakConductance="0.1nS"/>
<iafCell id="generic_neuron_iaf_cell" leakReversal="-50mV" thresh="-30mV" reset="-50mV" C="3pF" leakConductance="0.1nS"/>
<pulseGenerator id="offset_current" delay="50 ms" duration="200ms" amplitude="0pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_URYDL_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_VD12_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_AS2_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
Expand Down
8 changes: 4 additions & 4 deletions examples/c302_B_Syns.net.nml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -51,10 +51,10 @@ Parameters and setting used to generate this network:
<iafCell type="iafActivityCell" id="generic_muscle_iaf_cell" C="3pF" thresh="-30mV" reset="-50mV" leakConductance="0.1nS" leakReversal="-50mV" tau1="50ms"/>
<iafCell type="iafActivityCell" id="generic_neuron_iaf_cell" C="3pF" thresh="-30mV" reset="-50mV" leakConductance="0.1nS" leakReversal="-50mV" tau1="50ms"/>
<pulseGenerator id="offset_current" delay="50 ms" duration="200ms" amplitude="0pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AIZL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AIZL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_URYDL_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_VD12_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_AS2_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
Expand Down
8 changes: 4 additions & 4 deletions examples/c302_C0_Syns.net.nml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -107,10 +107,10 @@ Parameters and setting used to generate this network:
</biophysicalProperties>
</cell>
<pulseGenerator id="offset_current" delay="50 ms" duration="2000 ms" amplitude="0 pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AIZL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AIZL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_URYDL_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_VD12_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_AS2_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
Expand Down
8 changes: 4 additions & 4 deletions examples/c302_C1_Syns.net.nml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -107,10 +107,10 @@ Parameters and setting used to generate this network:
</biophysicalProperties>
</cell>
<pulseGenerator id="offset_current" delay="50 ms" duration="2000 ms" amplitude="0 pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AIZL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AIZL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_URYDL_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_VD12_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_AS2_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
Expand Down
8 changes: 4 additions & 4 deletions examples/c302_C2_Syns.net.nml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -135,10 +135,10 @@ Parameters and setting used to generate this network:
</biophysicalProperties>
</cell>
<pulseGenerator id="offset_current" delay="50 ms" duration="2000 ms" amplitude="0 pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AIZL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AIZL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_URYDL_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_VD12_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_AS2_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
Expand Down
8 changes: 4 additions & 4 deletions examples/c302_C_Syns.net.nml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -104,10 +104,10 @@ Parameters and setting used to generate this network:
</biophysicalProperties>
</cell>
<pulseGenerator id="offset_current" delay="50 ms" duration="2000 ms" amplitude="0 pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AIZL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AIZL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_URYDL_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_VD12_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_AS2_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
Expand Down
8 changes: 4 additions & 4 deletions examples/c302_D1_Syns.net.nml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -96,10 +96,10 @@ Parameters and setting used to generate this network:
</biophysicalProperties>
</cell>
<pulseGenerator id="offset_current" delay="50 ms" duration="2000 ms" amplitude="0 pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AIZL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AIZL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_URYDL_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_VD12_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_AS2_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
Expand Down
8 changes: 4 additions & 4 deletions examples/c302_D_Syns.net.nml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -89,10 +89,10 @@ Parameters and setting used to generate this network:
</biophysicalProperties>
</cell>
<pulseGenerator id="offset_current" delay="50 ms" duration="2000 ms" amplitude="0 pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_AIZL_1" delay="500ms" duration="800ms" amplitude="2pA"/>
<pulseGenerator id="stim_URYDL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_VD12_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AS2_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_AIZL_1" delay="500ms" duration="800ms" amplitude="1pA"/>
<pulseGenerator id="stim_URYDL_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_VD12_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
<pulseGenerator id="stim_AS2_2" delay="1900ms" duration="800ms" amplitude="5pA"/>
Expand Down
4 changes: 2 additions & 2 deletions examples/summary/images/muscle_activity_C0_Syns.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 2 additions & 2 deletions examples/summary/images/muscles_C0_Syns.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 2 additions & 2 deletions examples/summary/images/neuron_activity_C0_Syns.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 2 additions & 2 deletions examples/summary/images/neurons_C0_Syns.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 2 additions & 2 deletions examples/summary/images/traces_muscles_Syns_C0.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 2 additions & 2 deletions examples/summary/images/traces_muscles_activity_Syns_C0.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 2 additions & 2 deletions examples/summary/images/traces_neuron_Syns_C0.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
4 changes: 2 additions & 2 deletions examples/summary/images/traces_neuron_activity_Syns_C0.png
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.

0 comments on commit e391320

Please sign in to comment.