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@BackofenLab Bioinformatics Lab - Department of Computer Science - University Freiburg

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    77 repositories

    • AxoWise

      Public
      An integrated graph system of biological entities, functional terms, and publications.
      sqlneo4jproteinsgraph-databasegephinetwork-analysiscypherpathway
      Vue
      •
      GNU General Public License v3.0
      •0•4•15•0•Updated Oct 18, 2024Oct 18, 2024

    • BackofenWeb

      Public
      Github Pages Repository for the BackofenLab Group Page
      TeX
      •0•1•0•0•Updated Oct 8, 2024Oct 8, 2024

    • Optimierung-pages

      Public
      JavaScript
      •0•0•0•0•Updated Oct 8, 2024Oct 8, 2024

    • ML_LS_resources

      Public
      ML in Life Science resources - hands-on lectures, hands-on exercise solutions
      Jupyter Notebook
      •0•1•0•0•Updated Oct 7, 2024Oct 7, 2024

    • IntaRNA

      Public
      Efficient target prediction incorporating accessibility of interaction sites
      toolstructurernainteractionbioinformatics
      C++
      •
      Other
      •27•45•26•1•Updated Sep 18, 2024Sep 18, 2024

    • Long_Range_RNA_Interactions

      Public
      Genomic long range RNA-RNA interactions in flaviviruses
      Python
      •1•0•1•0•Updated Jul 15, 2024Jul 15, 2024

    • BioinformaticsII-pages

      Public
      JavaScript
      •0•0•0•0•Updated Jun 25, 2024Jun 25, 2024

    • BioinformaticsI-pages

      Public
      JavaScript
      •0•0•0•0•Updated Jun 25, 2024Jun 25, 2024

    • B2_01_hidden_markov_models

      Public template
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 30, 2024Apr 30, 2024

    • B2_10_intro_mapping

      Public template
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

    • B2_06_BLAST

      Public template
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

    • B2_00_intro_to_classroom

      Public template
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

    • MutARNA

      Public
      Jupyter Notebook
      •3•1•0•0•Updated Mar 21, 2024Mar 21, 2024

    • RBPBench

      Public
      Python
      •0•1•0•0•Updated Mar 20, 2024Mar 20, 2024

    • LocARNA_consensus_constraint

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 4, 2024Mar 4, 2024

    • RNA-Playground

      Public
      Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.
      bioinformaticsalignmentrnaalgorithmteachingnussinovstructure-prediction
      JavaScript
      •16•34•1•0•Updated Feb 28, 2024Feb 28, 2024

    • Cherri

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•17•3•Updated Feb 26, 2024Feb 26, 2024

    • LatPack

      Public
      Collection of tools related to modelling and folding simulations of lattice-protein models with arbitrary energy functions
      C++
      •
      MIT License
      •1•1•0•0•Updated Feb 7, 2024Feb 7, 2024

    • V_RNA-pages

      Public
      JavaScript
      •0•0•0•0•Updated Feb 2, 2024Feb 2, 2024

    • B1_10_tree-UPGMA

      Public template
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • B1_09_align-msa

      Public template
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • B1_08_PAM

      Public template
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 11, 2024Jan 11, 2024

    • B1_05_align-local

      Public template
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 28, 2023Nov 28, 2023

    • B1_04_align-affine-gap

      Public template
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 20, 2023Nov 20, 2023

    • B1_02_edit-distance

      Public template
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 15, 2023Nov 15, 2023

    • B1_03_align-linear-gap

      Public template
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 15, 2023Nov 15, 2023

    • B1_01_biology-basics

      Public template
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 23, 2023Oct 23, 2023

    • RNAProt

      Public
      Modelling RBP binding preferences to predict RPB binding sites
      Python
      •
      MIT License
      •4•10•1•0•Updated Aug 11, 2023Aug 11, 2023

    • CRISPRidentify

      Public
      Python
      •
      MIT License
      •6•24•2•0•Updated Jul 12, 2023Jul 12, 2023

    • CRISPRloci

      Public
      Python
      •6•13•5•1•Updated Apr 11, 2023Apr 11, 2023