Bhattacharya Lab

All

13 repositories

lociPARSE
Public
locality-aware invariant Point Attention-based RNA ScorEr
deep-learning rna-structure-prediction rna-scoring attention-network
Python
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GNU General Public License v3.0
•0•5•1•0•Updated Nov 11, 2024Nov 11, 2024
ProRNA3D-single
Public
Single-sequence protein-RNA complex structure prediction with biological language models
deep-learning language-model protein-rna-interactions biomolecular-structures
Python
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GNU General Public License v3.0
•0•7•0•0•Updated Aug 23, 2024Aug 23, 2024
RNAmark
Public
The landscape of RNA 3D structure modeling with transformer networks
neural-network transformer rna-structure
Shell
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GNU General Public License v3.0
•0•1•0•0•Updated Jul 21, 2024Jul 21, 2024
EquiPNAS
Public
pLM-informed E(3) equivariant deep graph neural networks for protein-nucleic acid binding site prediction
protein-rna-interactions protein-dna-interactions protein-language-model graph-neural-netowrks
Python
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GNU General Public License v3.0
•1•19•2•0•Updated Apr 24, 2024Apr 24, 2024
CASP15
Public
CASP15 performance benchmarking of the state-of-the-art protein structure prediction methods
deep-learning neural-network transformers protein-structure-prediction
GNU General Public License v3.0
•0•7•1•0•Updated Dec 13, 2023Dec 13, 2023
EquiPPIS
Public
E(3) equivariant graph neural network for PPI site prediction
deep-learning neural-network equivariance protein-protein-interactions
Python
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GNU General Public License v3.0
•2•9•1•0•Updated Sep 18, 2023Sep 18, 2023
PIQLE
Public
Protein-protein interface quality estimation by deep graph learning
deep-learning protein-protein-interaction graph-neural-networks protein-complex
Python
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GNU General Public License v3.0
•2•4•2•0•Updated Aug 8, 2023Aug 8, 2023
rrQNet
Public
Protein contact map quality estimation by evolutionary reconciliation
deep-learning quality-estimation protein-structure-prediction contact-maps
Python
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GNU General Public License v3.0
•0•1•0•0•Updated Jul 21, 2022Jul 21, 2022
SPECS
Public
Superposition-based Protein Embedded CA SC score
protein-structure-prediction protein-analysis protein-model-accuracy superposition side-chain-orientation
C++
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GNU General Public License v3.0
•4•3•1•0•Updated Oct 11, 2021Oct 11, 2021
DisCovER
Public
Distance- and orientation-based Covariational threadER
dynamic-programming network-alignment protein-homology-modeling protein-structure-prediction protein-threading
C++
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GNU General Public License v3.0
•0•0•0•0•Updated Oct 11, 2021Oct 11, 2021
DConStruct
Public
Hybridized distance- and contact-based hierarchical protein folding
protein-folding abinitio-simulations protein-structure-prediction protein-modeling
Python
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GNU General Public License v3.0
•0•2•1•0•Updated Mar 1, 2021Mar 1, 2021
PolyFold
Public
An interactive visual simulator for distance-based protein folding
protein-dynamics stochastic-optimization protein-folding protein-structure-prediction
Java
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GNU General Public License v3.0
•6•24•0•0•Updated Mar 1, 2021Mar 1, 2021
QDeep
Public
Distance-based protein model quality estimation using deep ResNets
deep-learning protein-structure-prediction protein-scoring-functions protein-model-quality-estimation
Python
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GNU General Public License v3.0
•5•8•0•1•Updated Jul 26, 2020Jul 26, 2020