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@BioMedIA Biomedical Image Analysis Group

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    15 repositories

    • deepali

      Public
      Image, point set, and surface registration in PyTorch.
      medical-imagingimage-registrationspatial-transformer-networks
      Python
      •
      Apache License 2.0
      •6•26•5•2•Updated Oct 18, 2024Oct 18, 2024

    • dHCP-release-notes

      Public
      Notes for the dHCP data release
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •10•14•1•0•Updated May 18, 2024May 18, 2024

    • UKBB-GNC-Abdominal-Segmentation

      Public
      Abdominal Organ Segmentation of UK Biobank and GNC Studies
      Python
      •
      Apache License 2.0
      •6•3•1•0•Updated Jun 19, 2023Jun 19, 2023

    • MIRTK

      Public
      The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at
      toolkitimage-processingmedical-imagingimage-registrationfree-form-deformationffd
      C++
      •
      Apache License 2.0
      •71•186•64•3•Updated Jul 28, 2022Jul 28, 2022

    • UKBB-GNC-QC-Tool

      Public
      Python
      •
      Apache License 2.0
      •1•3•0•0•Updated Jun 24, 2022Jun 24, 2022

    • dhcp-structural-pipeline

      Public
      structural analysis of neonatal brain MRI scans
      Python
      •
      Other
      •20•51•21•0•Updated Aug 5, 2021Aug 5, 2021

    • poster-templates

      Public
      BioMedIA's poster templates used for conferences
      TeX
      •
      Other
      •3•10•0•0•Updated Jun 12, 2019Jun 12, 2019

    • slurm-formula

      Public
      Salt configuration for a BioMedIA's Slurm cluster
      SaltStack
      •5•3•0•1•Updated Aug 10, 2018Aug 10, 2018

    • IRTK

      Public
      The Image Registration Toolkit
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •43•77•8•1•Updated Mar 14, 2018Mar 14, 2018

    • ansible-xnat

      Public
      Ansible playbook for automated creation of XNAT build environment
      2•0•2•0•Updated Feb 12, 2018Feb 12, 2018

    • xnat-plugins

      Public
      Custom XNAT plugins for the dHCP project
      CSS
      •2•0•0•0•Updated Jul 26, 2017Jul 26, 2017

    • openmole-workflows

      Public
      Workflows and archives for the Frontiers 2016 paper "Reproducible large-scale neuroimaging studies with the OpenMOLE workflow management system"
      Shell
      •2•1•0•0•Updated Aug 17, 2016Aug 17, 2016

    • irtk-refactored-deprecated

      Public
      C++
      •
      Apache License 2.0
      •7•8•22•0•Updated Dec 21, 2015Dec 21, 2015

    • conda-recipes

      Public
      Shell
      •1•0•0•0•Updated Oct 13, 2015Oct 13, 2015

    • python-irtk

      Public
      Cython based wrapper for IRTK
      Python
      •4•10•3•0•Updated Oct 13, 2015Oct 13, 2015