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@CNBP Canadian Neonatal Brain Platform

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    28 repositories

    • DICOMTransit

      Public
      This is the staging server which preliminarily processed data and anonymize them before sending it to destinations such as CNBP
      Python
      •
      GNU General Public License v3.0
      •1•3•4•0•Updated May 26, 2021May 26, 2021

    • neuroimaging-training-03

      Public
      HTML
      •
      Other
      •1•0•0•0•Updated Nov 27, 2020Nov 27, 2020

    • RCAPI

      Public
      Customized RedCap API Client for CNBP
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 5, 2020Jun 5, 2020

    • datagator

      Public
      A simple Flask app that will collect data for LORIS
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 22, 2020May 22, 2020

    • Loris

      Public
      LORIS is a web-accessible database solution for longitudinal multi-site studies.
      PHP
      •
      GNU General Public License v3.0
      •173•0•0•0•Updated Jan 28, 2020Jan 28, 2020

    • LORIS_MySQLStructure

      Public
      Hosting SchemaSpy output from LORIS MySQL backend
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 23, 2019Oct 23, 2019

    • SeleRed

      Public
      Webpage automation for booking systems.
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 7, 2019Oct 7, 2019

    • PowerEffect

      Public
      A few simple python script to produce nice figures on sample size calculations, super useful during grant rush period.
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 10, 2019Sep 10, 2019

    • PyCap

      Public
      REDCap in Python
      Python
      •
      MIT License
      •80•0•0•0•Updated Aug 30, 2019Aug 30, 2019

    • NIfTI-Image-Converter

      Public
      🖼 A lightweight neuroimaging .nii to .png converter for Matlab and Python users
      MATLAB
      •
      MIT License
      •40•0•0•0•Updated Jun 14, 2019Jun 14, 2019

    • brain-extraction

      Public
      Brain Extraction tools comparison experiment
      MATLAB
      •0•0•0•0•Updated Mar 25, 2019Mar 25, 2019

    • DICOMetrics

      Public
      A Set of Methods to Calcualte Image Metrics that when they may be used to provide statistical quality control
      MATLAB
      •2•3•0•0•Updated Jan 9, 2019Jan 9, 2019

    • pfile-tools

      Public
      GE P-File Utilities
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•0•0•0•Updated Jan 8, 2019Jan 8, 2019

    • deepmedic

      Public
      Efficient Multi-Scale 3D Convolutional Neural Network for Brain Lesion Segmentation
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •342•0•0•0•Updated Oct 11, 2018Oct 11, 2018

    • DeepDiscovery

      Public
      Deep Learning tools for medical image and biomarker analysis
      Python
      •7•0•0•0•Updated Sep 28, 2018Sep 28, 2018

    • Loris-MRI

      Public
      The set of scripts that preprocess and insert MRI data into the database.
      Perl
      •51•0•0•0•Updated Sep 21, 2018Sep 21, 2018

    • neuropredict

      Public
      Easy and comprehensive assessment of predictive power, with support for neuroimaging features
      Python
      •
      MIT License
      •27•0•0•0•Updated Sep 17, 2018Sep 17, 2018

    • BoutiquesDescriptors

      Public
      Boutiques task descripts
      0•0•0•0•Updated Sep 14, 2018Sep 14, 2018

    • testRepo

      Public
      This is a test Repo
      1•0•0•0•Updated Aug 23, 2018Aug 23, 2018

    • N4BiasFieldCorrection

      Public
      This is N4 bias field correction for MRI
      Python
      •7•0•0•0•Updated Jun 13, 2018Jun 13, 2018

    • HyperDenseNet

      Public
      This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.
      Python
      •
      MIT License
      •41•0•0•0•Updated Apr 17, 2018Apr 17, 2018

    • LorisHelper

      Public
      Helper scripts and other code for working with Loris
      PHP
      •0•0•0•0•Updated Apr 12, 2018Apr 12, 2018

    • TBSSVBA

      Public
      Luis's pipeline to execute TBSS VBA analyses after ANT/FNIRT
      MATLAB
      •1•0•0•0•Updated Jan 29, 2018Jan 29, 2018

    • DICOMetricsLearner

      Public
      Server component that handles QCMetrcis computation
      Jupyter Notebook
      •1•0•0•0•Updated Jan 18, 2018Jan 18, 2018

    • SPM

      Public
      BIDS App containing an instance of the SPM software.
      MATLAB
      •
      Apache License 2.0
      •12•0•0•0•Updated Jan 17, 2018Jan 17, 2018

    • LiviaNET

      Public
      This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
      Python
      •
      MIT License
      •52•0•0•0•Updated Jan 11, 2018Jan 11, 2018

    • DICOMetricsApp

      Public
      A Simple Xamarin app to help with ImageMetrics quality control process.
      C#
      •2•2•0•0•Updated Oct 17, 2017Oct 17, 2017

    • dockerfile-templates

      Public
      Dockerfile templates commonly used in BIDS Apps
      Apache License 2.0
      •8•0•0•0•Updated Nov 2, 2016Nov 2, 2016