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    28 repositories

    • ecephys

      Public
      Python extracellular electrophysiology tools
      Python
      •2•3•4•0•Updated Nov 11, 2024Nov 11, 2024

    • wisc_ecephys_tools

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • graphiit

      Public
      Personal utilities for building PyPhi networks that need to be large and/or malleable.
      Python
      •
      GNU General Public License v3.0
      •2•6•0•0•Updated May 30, 2024May 30, 2024

    • Marshall_et_al_2024

      Public
      A Mathematical Framework for Macro Units with Intrinsic Cause-Effect Power
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 17, 2024May 17, 2024

    • ece-env

      Public
      0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • spikeinterface

      Public
      A Python-based module for creating flexible and robust spike sorting pipelines.
      Python
      •
      MIT License
      •187•0•0•0•Updated Feb 6, 2024Feb 6, 2024

    • ecephys_project_template

      Public template
      Use as template for CSC-UW ecephys projects relying on ecephys_project_manager
      Python
      •0•0•0•0•Updated Jan 30, 2024Jan 30, 2024

    • on_off_detection

      Public
      Detect ON- and OFF-periods from single-unit activity
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 20, 2023Dec 20, 2023

    • ephyviewer

      Public
      Simple viewers for ephys signals, events, video and more
      Python
      •
      MIT License
      •14•0•0•0•Updated May 12, 2023May 12, 2023

    • kCSD-python

      Public
      Kernel Current Source Density
      Jupyter Notebook
      •23•0•0•0•Updated May 9, 2023May 9, 2023

    • Kilosort

      Public
      Fast spike sorting with drift correction for up to a thousand channels
      MATLAB
      •
      GNU General Public License v2.0
      •248•0•0•0•Updated Nov 3, 2022Nov 3, 2022

    • emg_from_lfp

      Public archive
      Derive EMG from LFP through correlation of high-frequency activity.
      Python
      •0•0•0•0•Updated Jul 20, 2022Jul 20, 2022

    • hypnogram

      Public archive
      Simple hypnogram utilities in Python
      Python
      •0•1•0•0•Updated Jul 20, 2022Jul 20, 2022

    • sglxarray

      Public archive
      Utilities for loading SpikeGLX data in xarray format.
      Jupyter Notebook
      •2•2•0•0•Updated Jul 20, 2022Jul 20, 2022

    • ibl-neuropixel

      Public
      Collection of tools to handle Neuropixel 1.0 and 2.0 data
      Python
      •
      MIT License
      •5•0•0•0•Updated Jul 19, 2022Jul 19, 2022

    • tdt_xarray

      Public
      Utilities for loading TDT data in xarray format
      Python
      •0•0•0•0•Updated Jun 15, 2022Jun 15, 2022

    • ecephys_spike_sorting

      Public
      Modules for processing extracellular electrophysiology data from Neuropixels probes
      Python
      •
      Other
      •91•0•0•0•Updated May 11, 2022May 11, 2022

    • allenCCF

      Public
      Tools to work with Allen Inst CCF data in matlab
      MATLAB
      •78•0•0•0•Updated Mar 22, 2022Mar 22, 2022

    • csc-eeg-tools

      Public
      Set of matlab functions for EEG io, preprocessing, analysis from the Center for Sleep and Consciousness, University of Wisconsin (csc)
      MATLAB
      •7•19•7•1•Updated Feb 15, 2022Feb 15, 2022

    • sleepscore

      Public
      Load and sleepscore neuropixel data with visbrain's Sleep module
      Python
      •1•1•1•0•Updated Jan 27, 2022Jan 27, 2022

    • barcode_sync

      Public
      Use random sync pulses to map times from recording to another
      Jupyter Notebook
      •0•0•0•0•Updated Dec 3, 2021Dec 3, 2021

    • spikeextractors

      Public archive
      Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.
      Python
      •
      MIT License
      •48•0•0•0•Updated Oct 26, 2021Oct 26, 2021

    • spikesorters

      Public archive
      Python-based module with spike sorter wrappers and a simple API for running them.
      Python
      •
      MIT License
      •20•0•0•0•Updated Jul 28, 2021Jul 28, 2021

    • InceptionTime

      Public
      InceptionTime: Finding AlexNet for Time Series Classification
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •148•0•0•0•Updated Oct 24, 2020Oct 24, 2020

    • analysis-tools

      Public
      Code for reading data saved by the Open Ephys GUI
      C
      •176•0•0•0•Updated Aug 24, 2019Aug 24, 2019

    • npy-matlab

      Public
      Experimental code to read/write NumPy .NPY files in MATLAB
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •211•0•0•0•Updated Nov 14, 2018Nov 14, 2018

    • swa-matlab

      Public
      Sleep Wave Analysis - an open source toolbox for matlab to score and analyse various waveforms in sleep EEG data
      MATLAB
      •20•2•0•0•Updated Jun 14, 2018Jun 14, 2018

    • iit-pseudocode

      Public
      Pseudocode for the major algorithms of Integrated Information Theory
      2•16•0•0•Updated Jan 29, 2016Jan 29, 2016