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    49 repositories

    • cam_acq

      Public
      Python project to control microscope through client-server program.
      Python
      •
      Apache License 2.0
      •1•3•1•8•Updated Nov 7, 2024Nov 7, 2024

    • pipex

      Public
      A pipeline to transform images into valuable analysis items
      Python
      •
      MIT License
      •2•9•0•0•Updated Nov 6, 2024Nov 6, 2024

    • camacq-plugins

      Public
      Plugins for camacq
      Python
      •
      Apache License 2.0
      •0•0•0•6•Updated Nov 4, 2024Nov 4, 2024

    • bioe-postdoc-chalktalk

      Public
      Website for the BioE Postdoc Chalk Talk
      HTML
      •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

    • SubCellPortable

      Public
      This is a convenient code wrapper to run Lundberg lab SubCell model in inference with your own images
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 3, 2024Oct 3, 2024

    • covid19ai.io

      Public
      COVID19AI.IO -- An AI Model Repository for Fighting COVID-19
      Python
      •1•0•3•1•Updated Sep 3, 2024Sep 3, 2024

    • stable-diffusion

      Public
      A latent text-to-image diffusion model
      Jupyter Notebook
      •
      Other
      •10k•1•0•0•Updated Jun 24, 2024Jun 24, 2024

    • MetabolismManuscript

      Public
      custom code written for the analysis of the manuscript "Widespread enzyme expression variations underly diverse metabolic capacities within cell types"
      Python
      •0•0•0•0•Updated Jun 14, 2024Jun 14, 2024

    • HDCA-FetalLung-SpatialProteomics

      Public
      Custom software written for analysis of spatial proteomics data from fetal lung acquired in the HDCA project.
      spatial-proteomicscell-atlasimagej-macroshuman-development-dataset
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Jun 14, 2024Jun 14, 2024

    • CellCyclePlottingDataframes

      Public
      Dataframes for plotting the cell cycle data
      0•0•0•0•Updated May 13, 2024May 13, 2024

    • ell_code_template

      Public
      Python
      •0•0•0•0•Updated Apr 24, 2024Apr 24, 2024

    • cpias

      Public
      🌿 Cell Profiling Image Analysis Server
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Mar 20, 2024Mar 20, 2024

    • cell-pro-template

      Public template
      This repository serves only as a Python template for new projects
      Python
      •
      Apache License 2.0
      •1•0•0•1•Updated Mar 20, 2024Mar 20, 2024

    • hpa_densenet

      Public
      Running the Bestfitting Densenet model
      Python
      •
      MIT License
      •2•0•0•4•Updated Mar 13, 2024Mar 13, 2024

    • HPA-Cell-Segmentation

      Public
      Python
      •
      Apache License 2.0
      •26•95•0•0•Updated Jan 25, 2024Jan 25, 2024

    • FucciSingleCellSeqPipeline

      Public
      Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model -- RNA-Seq analysis pipeline
      Python
      •4•7•1•0•Updated Oct 19, 2023Oct 19, 2023

    • SingleCellProteogenomics

      Public
      Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model
      Python
      •5•13•0•0•Updated Oct 19, 2023Oct 19, 2023

    • memento

      Public
      A simple tool for sharing and annotate images
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 17, 2023Oct 17, 2023

    • Loc-CAT

      Public
      The Cellular Annotation Tool
      Python
      •
      GNU General Public License v3.0
      •2•7•0•0•Updated Sep 28, 2023Sep 28, 2023

    • HPA-model-zoo

      Public
      A collection of deep learning models for analyzing the Human Protein Atlas images.
      Vue
      •
      Apache License 2.0
      •1•4•0•17•Updated Sep 7, 2023Sep 7, 2023

    • Micronucleidetection

      Public
      Software to identify nuclei
      Python
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Jul 6, 2023Jul 6, 2023

    • HPA-competition

      Public
      Human Protein Atlas image classification competition
      Jupyter Notebook
      •
      MIT License
      •3•12•2•1•Updated May 22, 2023May 22, 2023

    • pytorch_zoo

      Public
      This is for HPA-Cell_image-segmentation
      Python
      •1•0•0•0•Updated Jan 12, 2023Jan 12, 2023

    • HPA-competition-solutions

      Public
      Team original solutions for the Human Protein Atlas image classification competition
      Jupyter Notebook
      •
      MIT License
      •21•60•1•6•Updated Nov 22, 2022Nov 22, 2022

    • cellpro-imjoy-plugins

      Public
      ImJoy Plugins for the Cell Profiling Group.
      HTML
      •
      MIT License
      •2•0•0•0•Updated Nov 2, 2022Nov 2, 2022

    • seq2scope-ldm

      Public
      A latent diffusion model for predicting IF protein localization from reference markers
      Jupyter Notebook
      •
      Other
      •10k•0•0•0•Updated Oct 7, 2022Oct 7, 2022

    • densenet

      Public
      Python
      •0•2•0•0•Updated Oct 12, 2021Oct 12, 2021

    • lundberg-lab

      Public
      This is the source for the Lundberg lab website.
      JavaScript
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 14, 2021May 14, 2021

    • imjoy-plugin-config

      Public
      This is for hosting config files for imjoy plugins
      1•0•0•0•Updated Apr 26, 2021Apr 26, 2021

    • hpa-umap-explorer

      Public
      Exploring HPA Cell Atlas with a UMAP generated from a deep learning model for protein pattern classification
      0•0•0•0•Updated Mar 16, 2021Mar 16, 2021