ClandininLab

All

30 repositories

brainsss
Public
Preprocessing of volumetric neural data on sherlock (motion correction, zscoring, etc)
Jupyter Notebook
•4•5•2•2•Updated Nov 6, 2024Nov 6, 2024
multistim
Public
server/client and gui for presenting audio and visual stimuli to fruit flies
Python
•
MIT License
•0•0•0•0•Updated Nov 2, 2024Nov 2, 2024
bifrost
Public
Template building and multi-modal registration
Python
•
MIT License
•2•4•2•0•Updated Oct 18, 2024Oct 18, 2024
stimpack
Public
Precise and flexible generation of stimuli for neuroscience experiments.
Python
•
GNU General Public License v3.0
•2•7•7•1•Updated Oct 16, 2024Oct 16, 2024
brukerbridge
Public
Python
•1•0•3•0•Updated Sep 27, 2024Sep 27, 2024
flyvr
Public
Python
•
Other
•0•0•0•0•Updated Aug 26, 2024Aug 26, 2024
visanalysis
Public
Analysis environment for visprotocol imaging experiments
Python
•
MIT License
•1•2•0•0•Updated Aug 25, 2024Aug 25, 2024
labpack
Public
Lab-specific stimuli, config, and resources to be used with stimpack
Python
•
GNU General Public License v3.0
•1•1•1•0•Updated Jul 17, 2024Jul 17, 2024
visprotocol
Public
Visual stimulation protocol and metadata handler for flystim experiments
Python
•
MIT License
•0•0•3•0•Updated May 22, 2024May 22, 2024
L1L2-recurrent-feedback
Public
MATLAB
•0•0•0•0•Updated Mar 22, 2024Mar 22, 2024
modules
Public
Custom `lmod` modules for use on Sherlock
Lua
•0•0•0•0•Updated Jan 29, 2024Jan 29, 2024
flystim
Public
Visual stimulus generator for neuroscience experiments
virtual-reality scientific-computing visual-stimuli neuroscience-methods three-dimensional python
Python
•
MIT License
•2•4•6•0•Updated Jan 24, 2024Jan 24, 2024
voxelmorph
Public
Unsupervised Learning for Image Registration
Python
•
Apache License 2.0
•581•0•0•0•Updated Jun 21, 2023Jun 21, 2023
neurite
Public
Neural networks toolbox focused on medical image analysis
Python
•
Apache License 2.0
•67•0•0•0•Updated Jun 21, 2023Jun 21, 2023
pystrum
Public
A general library of python tools
Python
•12•0•0•0•Updated Jun 21, 2023Jun 21, 2023
brezovec_volition_2023
Public
Python
•0•0•0•0•Updated Jun 9, 2023Jun 9, 2023
flyrpc
Public
Library for managing server/client interactions
Python
•
Other
•0•0•0•0•Updated Jun 2, 2023Jun 2, 2023
pijm
Public
PIJM is just matplotlib
Python
•
MIT License
•0•0•0•0•Updated Sep 3, 2022Sep 3, 2022
brainsss2
Public
refactor of the brainsss repo for 2-photon imaging analysis
Jupyter Notebook
•
MIT License
•0•0•10•0•Updated Aug 9, 2022Aug 9, 2022
sleep-analysis
Public
Library for analyzing Drosophila Activity Monitor data
Jupyter Notebook
•
Other
•0•1•0•0•Updated Jul 11, 2022Jul 11, 2022
ANTsPy
Public
Advanced Normalization Tools in Python
Python
•
Apache License 2.0
•163•0•0•0•Updated Jun 29, 2022Jun 29, 2022
multisensory-freezing
Public
python scripts for the ball rig with auditory and visual stimuli
Python
•
MIT License
•0•0•0•0•Updated Dec 27, 2021Dec 27, 2021
lightcrafter
Public
Python
•
MIT License
•2•0•0•0•Updated Nov 23, 2021Nov 23, 2021
pasna-acr-currbio2021
Public
Original data and analysis code for Carreira-Rosario et al. "Mechanosensory input during circuit formation shapes Drosophila motor behavior through Patterned Spontaneous Network Activity", Current Biology 2021.
drosophila drosophila-melanogaster drosophila-larvae drosophila-brains
Python
•
Apache License 2.0
•0•1•0•0•Updated Sep 2, 2021Sep 2, 2021
fictrac
Public
A webcam-based method for tracking spherical motion and generating fictive animal paths.
C++
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Other
•28•1•0•0•Updated Dec 15, 2020Dec 15, 2020
containers
Public
Commonly used containers and scripts to build them
Makefile
•0•0•0•0•Updated Oct 21, 2020Oct 21, 2020
goal-driven-ANNs
Public
Jupyter Notebook
•0•0•0•0•Updated Sep 25, 2020Sep 25, 2020
dataflow
Public
Jupyter Notebook
•1•0•0•0•Updated Mar 10, 2020Mar 10, 2020
ipp-tools
Public
Collection of IPyParallel tools and helper scripts
Python
•
MIT License
•1•0•0•0•Updated Jun 29, 2017Jun 29, 2017
2pstim
Public
Custom-written code for visual stimulus presentation (Clark et al. 2011)
C++
•0•0•0•0•Updated Feb 6, 2017Feb 6, 2017