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    • AMI-Br

      Public
      AMI-Br: A Dataset of Typical and Atypical Mitotic Figures on Human Breast Cancer
      0000Updated Oct 28, 2024Oct 28, 2024
    • Alternative training set for the TUPAC16 auxiliary mitotic figure data set
      Jupyter Notebook
      41100Updated Oct 22, 2024Oct 22, 2024
    • FELIX

      Public
      Felinae Evaluation with Layperson and ML Interaction EXperience Dataset (FELIX)
      Jupyter Notebook
      Other
      0000Updated Oct 17, 2024Oct 17, 2024
    • Exact

      Public
      An open source online platform for collaborative image labeling of almost everything
      JavaScript
      MIT License
      1755110Updated Oct 1, 2024Oct 1, 2024
    • Repository for EXACT QueueRunner, a service that executes processing for jobs available on EXACT.
      Python
      MIT License
      2000Updated Sep 5, 2024Sep 5, 2024
    • deep-learning-optimizing-linear-regresision-github-starter-course created by GitHub Classroom
      0000Updated Aug 20, 2024Aug 20, 2024
    • Python
      0000Updated Jul 10, 2024Jul 10, 2024
    • Automatic cleaning of the QUILT-1M pathology dataset
      Jupyter Notebook
      MIT License
      0300Updated Jul 5, 2024Jul 5, 2024
    • nnUNet

      Public
      Python
      Apache License 2.0
      1.7k200Updated Jun 24, 2024Jun 24, 2024
    • Python
      0000Updated Jun 5, 2024Jun 5, 2024
    • MIDOGpp

      Public
      A large, multi-domain mitotic Figure Dataset
      Python
      MIT License
      81211Updated May 22, 2024May 22, 2024
    • Ressources of histopathology datasets
      43000Updated Apr 29, 2024Apr 29, 2024
    • Large-Scale Canine Cutaneous Mast Cell Tumor Dataset for Mitotic Figure Assessment on Whole Slide Images
      Jupyter Notebook
      102800Updated Apr 29, 2024Apr 29, 2024
    • Adapted nnUNet framework with additional features to suit the requirements for pathology applications
      Python
      Apache License 2.0
      1.7k000Updated Apr 8, 2024Apr 8, 2024
    • AIRoV

      Public
      JavaScript
      0000Updated Mar 18, 2024Mar 18, 2024
    • Rest API sync with the EXACT Server https://github.com/ChristianMarzahl/Exact
      Python
      MIT License
      3000Updated Feb 13, 2024Feb 13, 2024
    • SlideRunner is a tool for massive cell annotations in whole slide images
      Python
      GNU General Public License v3.0
      107552Updated Oct 4, 2023Oct 4, 2023
    • Evaluation container for the MIDOG 2021 challenge on grand-challenge.org
      Python
      1000Updated Sep 4, 2023Sep 4, 2023
    • Python
      0700Updated Aug 22, 2023Aug 22, 2023
    • COSAS

      Public
      Python
      5000Updated Jul 19, 2023Jul 19, 2023
    • Jupyter Notebook
      1000Updated Jul 18, 2023Jul 18, 2023
    • Python
      3610Updated Jul 17, 2023Jul 17, 2023
    • Python
      1200Updated Jun 5, 2023Jun 5, 2023
    • Cox_AMIL

      Public
      Code for our BVM workshop submission "Attention-based Multiple Instance Learning for Survival Prediction on Lung Cancer Tissue Microarrays"
      Jupyter Notebook
      GNU General Public License v3.0
      3610Updated Dec 16, 2022Dec 16, 2022
    • Automatic Subtyping for Atypical and Typical Mitosis using a Hierarchical Anchor-Free Object Detector
      Jupyter Notebook
      MIT License
      2000Updated Dec 12, 2022Dec 12, 2022
    • Robust quad-tree based registration on whole slide images (Marzahl et al.)
      Python
      MIT License
      5000Updated Sep 19, 2022Sep 19, 2022
    • Data access routines (database and images) for SlideRunner
      Python
      GNU General Public License v3.0
      2000Updated Aug 12, 2022Aug 12, 2022
    • LaTeX Template for short papers for the MIDOG challenge, based upon the HenriquesLab bioRxiv template
      TeX
      0010Updated Aug 5, 2022Aug 5, 2022
    • Reference implementation of domain-adversarial training on a RetinaNet (to use as template in the MIDOG challenge)
      Python
      11820Updated Jul 25, 2022Jul 25, 2022
    • MIDOG

      Public
      MItosis DOmain Generalization Challenge 2021/2022
      Python
      51410Updated Jun 19, 2022Jun 19, 2022