Repositories list

• intrepppid

  Public
  Incorporating Triplet Error for Predicting PPIs using Deep Learning

  deep-learningcomputational-biologyprotein-protein-interaction+ 2cross-speciesprotein-protein-interactions

  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

• InPheRNo-ChIP

  Public
  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Oct 13, 2024Oct 13, 2024

• GRouNdGAN

  Public
  A causal implicit generative model for simulating single-cell RNA-seq data guided by a gene regulatory network 🧬

  Python

  •

  GNU Affero General Public License v3.0

  •3•23•0•2•Updated Aug 2, 2024Aug 2, 2024

• ppi.bio

  Public
  HTML

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Jun 10, 2024Jun 10, 2024

• ppi_origami

  Public
  Tools for processing and analysing PPI datasets

  protein-protein-interactionprotein-protein-interactions

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 2, 2024Jun 2, 2024

• Emad-COMBINE-lab.github.io

  Public
  CSS

  •0•0•0•0•Updated Nov 2, 2023Nov 2, 2023

• InterpretableAI_for_DRP

  Public
  Code to run interpretable pathway-based models

  Python

  •0•1•0•0•Updated Apr 3, 2023Apr 3, 2023

• MARSY

  Public
  Code for the MARSY model with sample input and response. I included figures to show the architecture and format of input samples.

  Python

  •0•11•0•0•Updated Dec 22, 2022Dec 22, 2022