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    42 repositories

    • eg-web-fungi

      Public
      modules required to set up EG Fungi mirror
      Perl
      •
      Other
      •4•2•0•0•Updated Nov 5, 2024Nov 5, 2024

    • eg-web-metazoa

      Public
      modules required to set up EG Metazoa mirror
      Perl
      •
      Other
      •5•1•0•0•Updated Nov 5, 2024Nov 5, 2024

    • eg-web-plants

      Public
      modules required to set up EG Plants mirror
      HTML
      •
      Other
      •7•3•0•0•Updated Oct 31, 2024Oct 31, 2024

    • ensembl-static

      Public
      Stores all static contents for Non-vertebrates divisions and species.
      HTML
      •15•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • eg-web-protists

      Public
      modules required to set up EG Protists mirror
      Perl
      •
      Other
      •2•2•0•0•Updated Oct 24, 2024Oct 24, 2024

    • eg-web-common

      Public
      modules/files required to set up any of the EG genome browsers
      JavaScript
      •
      Other
      •13•4•0•0•Updated Oct 24, 2024Oct 24, 2024

    • eg-web-parasite

      Public
      Modules required to set up a WormBase ParaSite genome browser
      Perl
      •
      Apache License 2.0
      •1•2•0•0•Updated Sep 17, 2024Sep 17, 2024

    • eg-web-bacteria

      Public
      modules required to set up EG Bacteria mirror
      Perl
      •
      Other
      •0•1•0•0•Updated Sep 11, 2024Sep 11, 2024

    • eg-rest

      Public
      Ensembl Genomes REST interface plugins
      Perl
      •
      Apache License 2.0
      •3•5•0•0•Updated Sep 11, 2024Sep 11, 2024

    • eg-web-search

      Public
      Modules required for an EG mirror to use eb-eye search service
      Perl
      •
      Other
      •1•1•0•0•Updated Sep 11, 2024Sep 11, 2024

    • parasite-static

      Public
      Keeping static contents for ParaSite website
      HTML
      •3•1•0•0•Updated Mar 21, 2024Mar 21, 2024

    • parasite-docs

      Public
      Repository to store static documentation content for WormBase ParaSite (separate to main eg-web-parasite repo)
      HTML
      •3•1•0•0•Updated Mar 13, 2024Mar 13, 2024

    • parasite-rest

      Public
      Endpoints and documentation specific to the WormBase ParaSite REST service
      Perl
      •0•2•0•0•Updated Mar 13, 2024Mar 13, 2024

    • transplantdb-static

      Public
      Static HTML version of transplantdb.eu
      HTML
      •0•0•0•0•Updated Aug 30, 2023Aug 30, 2023

    • phytopathdb-static

      Public
      Static HTML version of phytopathdb.org
      HTML
      •0•0•0•0•Updated Aug 16, 2023Aug 16, 2023

    • wbps-biomart-perl

      Public
      MartView with specific customisations for WormBase ParaSite
      Perl
      •1•1•0•0•Updated Apr 14, 2023Apr 14, 2023

    • molecular_interactions_resource

      Public
      JavaScript
      •0•0•0•0•Updated Feb 23, 2023Feb 23, 2023

    • ensembl-analysis

      Public
      Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
      Perl
      •
      Apache License 2.0
      •35•0•0•0•Updated Nov 17, 2022Nov 17, 2022

    • eg-web-g1k

      Public
      Repository for files required to set up 1000genomes mirror of Ensembl
      HTML
      •0•0•0•0•Updated Oct 6, 2022Oct 6, 2022

    • eg-biomart-perl

      Public
      Ensembl Genomes specific fork of BioMart martview. Contains modifications to support Ensembl Genomes databases.
      Perl
      •3•1•0•0•Updated Jun 28, 2022Jun 28, 2022

    • RNAseqTHS

      Public
      RNASeq Trackhub Pipeline
      Perl
      •2•0•0•0•Updated Jul 14, 2021Jul 14, 2021

    • ebi_plant_index

      Public
      Parse EBI plant samples and represent them in json for federated search
      Python
      •1•0•0•0•Updated Jul 2, 2021Jul 2, 2021

    • Red

      Public
      Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
      C++
      •8•2•0•0•Updated May 18, 2021May 18, 2021

    • eg-web-testsuite

      Public
      Test suite for Ensembl Genomes websites
      Perl
      •0•1•0•0•Updated Apr 12, 2021Apr 12, 2021

    • arrayexpress-cram-submission

      Public
      A python pipeline for submitting CRAM files generated by ArrayExpress to the European Nucleotide Archive (ENA)
      Python
      •1•3•0•1•Updated Mar 31, 2021Mar 31, 2021

    • Liftoff

      Public
      An accurate GFF3/GTF lift over pipeline
      Python
      •
      GNU General Public License v3.0
      •54•0•0•0•Updated Mar 25, 2021Mar 25, 2021

    • eg-web-vectorbase

      Public
      modules required to set up a VectorBase genome browser
      Perl
      •3•0•0•0•Updated Sep 2, 2019Sep 2, 2019

    • ensemblgenomes-api

      Public
      Auxillary API for accessing Ensembl Genomes databases using the Ensembl Perl API
      Perl
      •
      Other
      •2•5•0•0•Updated Jun 5, 2019Jun 5, 2019

    • vectorbase-rest

      Public
      VectorBase REST interface plugins
      Perl
      •2•0•0•0•Updated Jan 31, 2019Jan 31, 2019

    • personal-dbolser

      Public
      Scripts and other junk from dbolser
      Shell
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 30, 2018Nov 30, 2018