Fraunhofer-Institut für Translationale Medizin und Pharmakologie ITMP

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21 repositories

kgg
Public
An automated workflow to create disease-specific Knowledge Graphs
Jupyter Notebook
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MIT License
•0•4•0•0•Updated Dec 5, 2024Dec 5, 2024
PEMT
Public
Source code and data files for "PEMT: A patent enrichment tool with applicability in drug discovery"
drug-discovery patent-search patent-landscape
Python
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MIT License
•3•13•2•0•Updated Nov 21, 2024Nov 21, 2024
datascience_toolkit
Public
ITMP Datascience Toolkit
HTML
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MIT License
•0•1•0•0•Updated Nov 21, 2024Nov 21, 2024
NTD
Public
Source code and data for paper titled "Pharmacological Signatures of Neglected Tropical Disease Drugs: Implications for One Health"
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Jul 3, 2024Jul 3, 2024
patent-clinical-candidate-characteristics
Public
Source code and data repository for paper titled "Exploring SureChEMBL from a drug discovery perspective".
patents druggability surechembl patent-landscaping patent-literature pemt patent-chemical-space
Jupyter Notebook
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MIT License
•2•3•0•0•Updated May 17, 2024May 17, 2024
alister
Public
ALISTER
R
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MIT License
•1•1•0•0•Updated May 15, 2024May 15, 2024
ProtacKB
Public
python codes and data
Jupyter Notebook
•0•1•1•0•Updated Mar 12, 2024Mar 12, 2024
CML_benchmarks
Public
Jupyter Notebook
•1•0•0•0•Updated Feb 1, 2024Feb 1, 2024
E3_binder_Model_2
Public
Source code and data repository for "Pharmacophoric-based ML model to filter candidate E3 ligands and predict E3 Ligase binding probabilities"
erg pharmacophore-based e3-ligase e3-ligase-ligand protacs
R
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MIT License
•0•0•0•0•Updated Nov 29, 2023Nov 29, 2023
Pharmaceutical-patent-landscaping
Public
Source code and data files for manuscript titled "Pharmaceutical patent landscaping: A novel approach to understand patents from the drug discovery perspective"
drug-discovery drug-repurposing patent-landscape target-importance
Jupyter Notebook
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MIT License
•2•12•0•0•Updated Nov 27, 2023Nov 27, 2023
mpox-kg
Public
Source code and data repository for paper titled "Monkeypox Knowledge Graph: A comprehensive representation embedding chemical entities and associated biology of Monkeypox "
cheminformatics biology knowledge-graph monkey-pox
Jupyter Notebook
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MIT License
•1•3•0•0•Updated Nov 27, 2023Nov 27, 2023
protacSpace
Public
A reposity for exploring the PROTACs chemical space
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Nov 10, 2023Nov 10, 2023
E3_binder_Model
Public
Source code and dataset for paper titled "Pharmacophore-based ML model to predict ligand selectivity for E3 ligase binders"
machine-learning virtual-screening pharmacophore-based e3-ligase-ligand e3-ligase-selectivity
R
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MIT License
•0•2•0•0•Updated Aug 10, 2023Aug 10, 2023
COVID-NMR-KG
Public
A Knowledge graph representation of COVID-NMR data
Jupyter Notebook
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MIT License
•1•0•0•0•Updated Apr 27, 2023Apr 27, 2023
AMR-KG
Public
A knowledge graph of experimental drug data for anti-microbial resistant strains.
knowledge-graph amr imi
Python
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MIT License
•4•4•1•0•Updated Feb 10, 2023Feb 10, 2023
bpo
Public
BPO: An application ontology for extending interoperability for in-vivo bioassay protocols relevant to antimicrobial resistance (AMR) drug discovery.
fair bioassay antimicrobial-drug-discovery ontology
Python
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Creative Commons Attribution 4.0 International
•0•0•1•0•Updated Jan 27, 2023Jan 27, 2023
BY-COVID-KG
Public
Jupyter Notebook
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MIT License
•2•1•0•0•Updated Nov 25, 2022Nov 25, 2022
IMI-Project-Prioritization
Public
Code and data repository for selection of datasets for FAIRification in Drug Discovery and Development.
drug-discovery prioritization fair-data dataset-selection
Python
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MIT License
•0•0•0•0•Updated Apr 22, 2022Apr 22, 2022
KNIME
Public
KNIME workflows for High Content Screening and High-Throughput Screening analysis
hts knime-workflow
MIT License
•1•0•0•0•Updated Apr 7, 2022Apr 7, 2022
KNIME-Fairplus
Public
Workflow for IMI project data collection and selection.
wp1 knime-workflow fairplus
MIT License
•0•0•0•0•Updated Mar 29, 2022Mar 29, 2022
SASC
Public
SASC: A Simple Approach to Synthetic Cohorts for generating longitudinal observational patient cohorts from COVID-19 clinical data
covid-19 virtual-cohort
R
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MIT License
•1•0•0•0•Updated Feb 12, 2022Feb 12, 2022