Repositories list

• hierarchy

  Public
  Quantifying Multi-Signal Quorum Sensing Clarifies Bacterial Responses to Environmental Variation

  TeX

  •0•2•0•0•Updated Nov 15, 2024Nov 15, 2024

• metaAnalysis

  Public
  R

  •

  MIT License

  •1•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• phage-community-dynamics

  Public
  MATLAB

  •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

• Rattray-2023-PLOSCompBio

  Public
  Downsampled raw colony images

  Jupyter Notebook

  •0•2•0•0•Updated Oct 17, 2023Oct 17, 2023

• Freq_of_Pa_QS_mutations_2021

  Public
  Code for O'Connor et al., 2022: https://www.biorxiv.org/content/biorxiv/early/2022/07/27/2021.02.22.432365.full.pdf

  R

  •0•0•0•0•Updated Dec 13, 2022Dec 13, 2022

• commensal_resistance

  Public
  MATLAB

  •0•0•0•0•Updated Sep 30, 2022Sep 30, 2022

• Rattray-2022

  Public
  Analysis supplement for Rattray et al., 2022

  0•0•0•0•Updated Apr 26, 2022Apr 26, 2022

• Varga-et-al_CompetitiveAbxRelease_SRA-upload

  Public
  Processing pipeline for SRA upload from raw data

  R

  •

  MIT License

  •0•0•0•0•Updated Aug 4, 2021Aug 4, 2021

• qsmodels

  Public archive
  Mathematical Models of Quorum Sensing

  matlabmathematicadifferential-equations+ 2mathematical-modellingmathematical-biology

  Mathematica

  •0•1•0•0•Updated Feb 10, 2020Feb 10, 2020

• pa_genomics

  Public
  R

  •1•1•0•0•Updated Dec 18, 2019Dec 18, 2019

• sbalance

  Public
  Structural Balance in Polymicrobial Networks

  MIT License

  •0•1•0•0•Updated Apr 9, 2018Apr 9, 2018

• Worm_Tracking

  Public
  A pipeline to analyze microscope images of C. elegans

  0•1•0•0•Updated Mar 7, 2018Mar 7, 2018