Repositories list

• Cascade

  Public
  Calibrated inference of spiking from calcium ΔF/F data using deep networks

  deep-learningcalcium-imagingdeconvolution+ 2spike-detectiontwo-photon

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •32•122•2•0•Updated Oct 27, 2024Oct 27, 2024

• td_dendrites

  Public
  Code to simulate the computational model for the manuscript 'Unsigned temporal difference errors in cortical apical dendrites during learning'

  saliencetemporal-differencing-learningpyramidal-neuron+ 3dendritic-computationsensory-processingtop-down-modulation

  Python

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Oct 5, 2024Oct 5, 2024

• multiarea_learning_manuscript

  Public
  Multiarea learning manuscript analysis code

  MATLAB

  •0•0•0•0•Updated Aug 28, 2024Aug 28, 2024

• Centripetal_propagation_astrocytes

  Public
  Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions

  calcium-imagingcorrelation-functionsastrocytes+ 1hippocampus

  MATLAB

  •

  GNU General Public License v3.0

  •0•8•0•0•Updated May 23, 2024May 23, 2024

• wilhelm-sych-tmaze-analysis

  Public
  MATLAB

  •1•0•0•0•Updated Oct 19, 2023Oct 19, 2023

• mesostat-dev

  Public
  A library for exploratory analysis of multivariate mesoscopic neuronal signals

  Python

  •

  MIT License

  •0•0•0•0•Updated Aug 16, 2023Aug 16, 2023

• manual-multisession-alignment

  Public
  A tool for manually track neurons across days

  MATLAB

  •1•1•0•0•Updated Aug 15, 2023Aug 15, 2023

• contrast-marker-video-tracker

  Public
  MATLAB

  •0•0•14•0•Updated Jul 15, 2022Jul 15, 2022

• dlc-scripts

  Public
  This library contains scripts for DeepLabCut used for joint and whisker tracking, as well as some auxiliary video processing scripts

  Jupyter Notebook

  •1•0•0•0•Updated Apr 22, 2022Apr 22, 2022

• CaImAn_DendriteAnalysis

  Public
  Jupyter notebooks for analysis of dendritic two-photon calcium imaging data using the CaImAn toolbox.

  pythonneurosciencecalcium-imaging

  Jupyter Notebook

  •3•2•0•0•Updated Sep 16, 2019Sep 16, 2019

• CaImAn_LocomotionAnalysis

  Public
  Jupyter notebooks for analysis of Pia's two-photon calcium imaging data using the the CaImAn toolbox.

  Jupyter Notebook

  •1•1•0•0•Updated Nov 29, 2018Nov 29, 2018

• blink-detector-ipy3

  Public
  A pipeline designed to process mouse blink videos, extract blink events and collect blinking statistics

  Jupyter Notebook

  •0•0•0•0•Updated Oct 3, 2018Oct 3, 2018

• CaImAn_legacy

  Public
  Jupyter Notebook

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated May 16, 2018May 16, 2018

• HHNE

  Public
  Happy Hifo NWB Editor

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 29, 2017Nov 29, 2017

• OCIA

  Public
  Calcium Imaging Analysis pipeline with a flexible framework

  MATLAB

  •

  GNU General Public License v3.0

  •3•3•0•0•Updated Nov 9, 2017Nov 9, 2017