HySonLab

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22 repositories

Protein_Redesign
Public
Complex-based Ligand-Binding Proteins Redesign by Equivariant Diffusion-based Generative Models
protein protein-design protein-representation-learning diffusion-models ligand-binding equivariant-network
Python
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MIT License
•5•38•0•0•Updated Nov 8, 2024Nov 8, 2024
ML4Insects
Public
Machine Learning for signal processing on insects' behaviors
machine-learning signal-processing time-series-analysis fourier-transform wavelet-transform
Jupyter Notebook
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MIT License
•1•7•0•0•Updated Nov 6, 2024Nov 6, 2024
LightMed
Public
Light-weight Medical Image Segmentation
medical-imaging convolutional-neural-networks medical-image-processing fourier-transform adversarial-attacks medical-image-segmentation light-weight-network
Python
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MIT License
•0•3•0•0•Updated Nov 1, 2024Nov 1, 2024
VietMedKG
Public
VietMedKG: Knowledge Graph and Benchmark for Traditional Vietnamese Medicine
knowledge-graph traditional-chinese-medicine retrieval-augmented-generation
Python
•0•7•0•0•Updated Sep 26, 2024Sep 26, 2024
VietMed-Sum
Public
Real-time Speech Summarization for Medical Conversations in Vietnamese
Jupyter Notebook
•1•3•0•0•Updated Sep 7, 2024Sep 7, 2024
TWGNN
Public
Fast Temporal Wavelet Graph Neural Networks (NeurIPS 2023)
matrix-factorization traffic-prediction wavelet-transform brain-networks graph-neural-networks temporal-graph-learning
Python
•3•6•1•0•Updated Aug 10, 2024Aug 10, 2024
EntityKG
Public
wav2graph: A Framework for Supervised Learning Knowledge Graph from Speech
speech knowledge-graph asr entity-extraction
Python
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MIT License
•0•8•0•0•Updated Aug 9, 2024Aug 9, 2024
Protein_Pretrain
Public
Multimodal Pretraining for Unsupervised Protein Representation Learning
proteins protein-structure point-cloud protein-sequences variational-autoencoder multimodal-deep-learning graph-neural-networks pretrained-language-model equivariant-representations large-language-models
Python
•1•19•0•0•Updated Jul 30, 2024Jul 30, 2024
Directed_Evolution
Public
Protein Design by Machine Learning guided Directed Evolution
proteins protein-design large-language-models directed-evolution
Python
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GNU General Public License v3.0
•2•24•1•0•Updated Jul 27, 2024Jul 27, 2024
LearnMMF
Public
Learning to Solve Multiresolution Matrix Factorization by Manifold Optimization and Evolutionary Metaheuristics
evolutionary-algorithms wavelet-transform graph-convolutional-network graph-wavelet matrix-factorisation multiresolution-analysis stiefel-manifold-optimization directed-evolution
Roff
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Other
•0•1•0•0•Updated Jun 4, 2024Jun 4, 2024
Ligand_Generation
Public
Target-aware Variational Auto-encoders for Ligand Generation with Multimodal Protein Representation Learning
variational-autoencoder geometric-deep-learning multimodal-deep-learning graph-neural-networks protein-ligand generative-ai
Python
•3•26•4•0•Updated May 17, 2024May 17, 2024
EquiMesh
Public
E(3)-Equivariant Mesh Neural Networks (AISTATS 2024)
mesh-networks point-cloud equivariant-representations equivariant-graph-neural-network
Python
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MIT License
•1•8•0•0•Updated Apr 24, 2024Apr 24, 2024
HierAttention
Public
Scalable Hierarchical Self-Attention with Learnable Hierarchy for Long-Range Interactions
graph transformers point-cloud sequence hierarchical-attention
Python
•1•7•0•0•Updated Apr 24, 2024Apr 24, 2024
LatentDE
Public
Latent-based Directed Evolution guided by Gradient Ascent for Protein Design
evolutionary-algorithm gradient-ascent variational-autoencoder protein-language-model directed-evolution protein-optimization
Python
•0•21•1•0•Updated Apr 16, 2024Apr 16, 2024
GraphLASSO
Public
Sparsity exploitation via discovering graphical models in multi-variate time-series forecasting
timeseries-forecasting graph-neural-networks temporal-graph-learning
Python
•0•12•0•0•Updated Feb 9, 2024Feb 9, 2024
pandemic_tgnn
Public
Predicting COVID-19 pandemic by spatio-temporal graph neural networks https://arxiv.org/abs/2305.07731
graph-neural-networks pandemic-data epidemic-modelling temporal-graph-learning
Python
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MIT License
•2•7•0•0•Updated Oct 27, 2023Oct 27, 2023
MGVAE
Public
Higher-order permutation-equivariant graph variational autoencoder to generate molecules in multiresolution manner. https://iopscience.iop.org/article/10.1088/2632-2153/acc0d8
variational-autoencoder graph-neural-networks molecule-generation generative-ai
Python
•0•2•0•0•Updated Oct 27, 2023Oct 27, 2023
drug-interactions
Public
Project of drug interactions https://arxiv.org/pdf/2209.09941.pdf https://arxiv.org/pdf/2302.08680.pdf, NeurIPS 2022 (AI for Science)
drug-repurposing variational-autoencoder molecular-fingerprints graph-neural-networks
Python
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MIT License
•2•13•0•0•Updated Oct 27, 2023Oct 27, 2023
Multires-Graph-Transformer
Public
Multiresolution Graph Transformers and Wavelet Positional Encoding for Learning Long-Range and Hierarchical Structures
density-functional-theory wavelet-transform graph-neural-networks positional-encoding graph-transformer
Python
•4•20•0•0•Updated Oct 27, 2023Oct 27, 2023
ViDeBERTa
Public
ViDeBERTa: A powerful pre-trained language model for Vietnamese, EACL 2023
language-model bert vietnamese-nlp large-language-models
Jupyter Notebook
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MIT License
•9•53•4•0•Updated Oct 27, 2023Oct 27, 2023
Multires-NP-hard
Public
Symmetry-preserving & Multiresolution learning to solve NP-hard problems in Operations Research
reinforcement-learning vehicle-routing-problem traveling-salesman-problem graph-neural-networks equivariant-networks
Jupyter Notebook
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MIT License
•2•9•0•0•Updated Oct 27, 2023Oct 27, 2023
Chinese_Postman_Problem
Public
The Chinese Postman Problem with load-dependent costs
evolutionary-algorithms dynamic-programming ant-colony-optimization iterated-local-search variable-neighborhood-search chinese-postman-problem
C++
•1•6•0•0•Updated Sep 4, 2023Sep 4, 2023