Repositories list

• ProteoForge_Analysis

  Public
  The analysis on the last chapter of my thesis

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Jan 1, 2025Jan 1, 2025

• RoLiM

  Public
  Detection of statistically enriched patterns in sequence data sets.

  Python

  •0•3•2•27•Updated Dec 23, 2024Dec 23, 2024

• Analysis_of_QuEStVar_Manuscript

  Public
  All the scripts and notebooks used to produce the data written in the manuscript titled "Statistical testing for protein equivalence identifies core functional modules conserved across 360 cancer cell lines and presents a general approach to investigating biological systems".

  Jupyter Notebook

  •

  MIT License

  •1•0•0•0•Updated May 2, 2024May 2, 2024

• Library-Filtering

  Public
  Script to filter spectral libraries from Spectronaut or DiaNN for peptides with fragments that support biotin modification at the peptide N terminus.

  Python

  •0•0•0•0•Updated Oct 7, 2023Oct 7, 2023

• SQuAPP

  Public
  Shiny App allows streamlined analysis of multiple levels of proteomics data.

  shinydata-analysisproteomics+ 3bioinformatics-toolpeptidomicsinteractive-apps

  R

  •

  MIT License

  •1•5•0•0•Updated May 30, 2023May 30, 2023

• ProteomeXchange-Scraper

  Public
  Automated web scraper to collect and filter pediatric cancer datasets from ProteomeXchange.

  seleniumbeautifulsoupproteomics+ 3webscrapingpediatric-cancerproteomexchange

  Python

  •0•0•2•0•Updated Jan 3, 2023Jan 3, 2023

• Rolim_DE

  Public
  R

  •0•0•0•0•Updated Jun 11, 2021Jun 11, 2021