Genomic Data Commons

All

84 repositories

gdc-frontend-framework
Public
TypeScript
•
Apache License 2.0
•0•9•0•7•Updated Oct 30, 2024Oct 30, 2024
gdc-docs
Public
Official repository for GDC User Guides in Markdown format
JavaScript
•
Apache License 2.0
•45•58•0•13•Updated Oct 30, 2024Oct 30, 2024
gdc-models
Public
Git repository centrally stores and serves GDC data models defined in static YAML files
library core
Python
•1•3•4•1•Updated Oct 25, 2024Oct 25, 2024
variant-filtration-cwl
Public
Workflows for filtering GDC VCFs
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•2•1•0•1•Updated Oct 22, 2024Oct 22, 2024
gdc-ng-models
Public
library core
Python
•
Apache License 2.0
•1•2•0•2•Updated Oct 16, 2024Oct 16, 2024
indexd
Public
Index service server
backend core
Python
•
Apache License 2.0
•20•3•0•9•Updated Oct 15, 2024Oct 15, 2024
variant-filtration-tool
Public
Support tools for the GDC Variant Filtration Workflow
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•2•1•0•3•Updated Sep 30, 2024Sep 30, 2024
gdcdictionary
Public
Data dictionary for the GDC
library core
Python
•
Apache License 2.0
•37•50•4•8•Updated Sep 17, 2024Sep 17, 2024
aliquot-maf-tools
Public
Tools for creating and filtering aliquot-level MAFs
docker bioinformatics maf-files workflow-tool
Python
•
Apache License 2.0
•2•4•0•0•Updated Sep 16, 2024Sep 16, 2024
indexclient
Public
Prototype index service client.
library core
Python
•
Apache License 2.0
•2•0•0•1•Updated Sep 12, 2024Sep 12, 2024
gdc-client
Public
GDC Data Transfer Tool
Python
•
Apache License 2.0
•42•146•19•29•Updated Sep 11, 2024Sep 11, 2024
psqlgraph
Public
Library for graph-like storage in postgresql using sqlalchemy
library core
Python
•
Apache License 2.0
•6•21•5•3•Updated Sep 6, 2024Sep 6, 2024
cdisutils
Public
Utility modules for GDC functionality
library core
Python
•2•1•0•14•Updated Aug 12, 2024Aug 12, 2024
gatk4_mutect2_cwl
Public
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•0•0•0•0•Updated Aug 7, 2024Aug 7, 2024
samtools-mpileup-tool
Public
GDC samtools mpileup tool docker
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•1•0•0•1•Updated Aug 6, 2024Aug 6, 2024
samtools-mpileup-cwl
Public
CWL for GDC samtools mpileup
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•1•0•0•0•Updated Aug 5, 2024Aug 5, 2024
gdc-dnaseq-cwl
Public
CWL for GDC DNASeq workflows
bioinformatics workflow cwl
Common Workflow Language
•
Apache License 2.0
•13•21•0•2•Updated Jul 18, 2024Jul 18, 2024
portal-ui
Public archive
GDC Data Portal UI
d3 frontend jest core recompose react redux flow relay
JavaScript
•
Apache License 2.0
•10•18•0•0•Updated Jul 9, 2024Jul 9, 2024
gatk4-mutect2-tool
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Jun 6, 2024Jun 6, 2024
vep-cwl
Public
GDC VEP Variant Annotation Workflow
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•3•0•0•2•Updated Apr 16, 2024Apr 16, 2024
gdc_tosvc_workflow
Public
GDC Tumor-only Somatic Variant Calling Workflow
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•0•0•0•0•Updated Apr 8, 2024Apr 8, 2024
gdc-tosvc-tools
Public
Tools for GDC Tumor-only Somatic Variant Calling Workflow
docker bioinformatics workflow-tool
Python
•
Apache License 2.0
•1•0•0•0•Updated Mar 30, 2024Mar 30, 2024
gdcdatamodel
Public
Translation layer between the GDC Data Dictionary and psqlgraph
library core
Python
•
Apache License 2.0
•3•28•5•9•Updated Mar 22, 2024Mar 22, 2024
django
Public
The Web framework for perfectionists with deadlines.
Python
•
BSD 3-Clause "New" or "Revised" License
•32k•0•0•1•Updated Mar 12, 2024Mar 12, 2024
aliquot-maf-cwl
Public
CWL tools and workflows for generating and processing aliquot-MAF
workflow bioinformatics maf-files cwl
Common Workflow Language
•
Apache License 2.0
•2•0•0•0•Updated Mar 6, 2024Mar 6, 2024
sesame-cwl
Public
GDC Methylation Array Workflow
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•0•1•0•2•Updated Feb 29, 2024Feb 29, 2024
gdc-rnaseq-cwl
Public
GDC RNA-Seq STAR 2-Pass Workflow
workflow bioinformatics cwl
Common Workflow Language
•
Apache License 2.0
•8•2•0•1•Updated Feb 15, 2024Feb 15, 2024
aliquot-level-maf
Public
library databuild
Python
•
Apache License 2.0
•1•2•0•3•Updated Feb 1, 2024Feb 1, 2024
gdc-maf-tool
Public
Python
•
Apache License 2.0
•2•7•0•4•Updated Feb 1, 2024Feb 1, 2024
maf-lib
Public
Python package for processing and creating MAF files for the GDC
python bioinformatics maf-files cruft
Python
•
Apache License 2.0
•3•6•1•1•Updated Dec 14, 2023Dec 14, 2023