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    17 repositories

    • PTM-POSE

      Public
      Python package for projecting PTMs onto any splice event quantification data, such as those from MATS or SpliceSeq
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

    • KSTAR

      Public
      Kinase-Substrate Translation to Activity Relationships
      Python
      •
      Other
      •0•6•8•0•Updated Dec 6, 2024Dec 6, 2024

    • CoDIAC

      Public
      Python
      •
      Other
      •0•0•3•0•Updated Nov 18, 2024Nov 18, 2024

    • TNBC_KSTAR_Analysis

      Public
      Code used for the analysis of active kinases across triple negative breast cancer patients
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Oct 15, 2024Oct 15, 2024

    • proteome-scout-3

      Public
      Python
      •0•0•10•1•Updated Sep 24, 2024Sep 24, 2024

    • SH2_contact_analysis

      Public
      CoDIAC-based analysis of the human SH2 domain family
      Gherkin
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jul 18, 2024Jul 18, 2024

    • ExonPTMapper

      Public
      Python package for processing exon information from Ensembl/Biomart, mapping this information to PTM information from ProteomeScout, and doing downstream analysis
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 1, 2024Jul 1, 2024

    • PTM_Splicing_Analysis

      Public
      Contains all code used to generate data and figures for the following manuscript:
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 9, 2024Jun 9, 2024

    • ProteomeScoutAPI

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•6•0•Updated Oct 14, 2022Oct 14, 2022

    • KinPred

      Public
      KinPred code for unification of kinase-prediction resources
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 10, 2022May 10, 2022

    • KSTAR_Applications

      Public
      Code demonstrating KSTAR examples and as published
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •2•1•0•0•Updated Apr 8, 2022Apr 8, 2022

    • OpenEnsembles

      Public
      Code for ensemble clustering
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •15•102•1•0•Updated Jul 8, 2021Jul 8, 2021

    • KinaseToolkitModeling

      Public
      MATLAB
      •0•0•0•0•Updated Apr 28, 2021Apr 28, 2021

    • ProteomeScout

      Public
      PHP
      •0•0•3•0•Updated Dec 3, 2019Dec 3, 2019

    • ASPEN

      Public
      ASPEN repository, associated with 2019 publication
      Python
      •
      GNU General Public License v3.0
      •3•3•0•0•Updated Oct 30, 2019Oct 30, 2019

    • Competition_modeling

      Public
      Notes and code from my rotation with the Naegle lab (modeling competition between phosphotyrosine binding partners)
      Jupyter Notebook
      •0•0•0•0•Updated Jun 6, 2018Jun 6, 2018

    • ASPEN_dev

      Public
      Python
      •0•0•0•0•Updated Jul 31, 2017Jul 31, 2017