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@OHDSI Observational Health Data Sciences and Informatics

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    318 repositories

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •15•15•0•1•Updated Jan 24, 2025Jan 24, 2025

    • Strategus

      Public
      An R package for coordinating and executing analytics using HADES modules
      R
      •11•6•16•5•Updated Jan 24, 2025Jan 24, 2025

    • ClinicalCharacteristics

      Public
      [under development] table shell approach to OMOP characterization
      R
      •
      Apache License 2.0
      •1•0•11•0•Updated Jan 24, 2025Jan 24, 2025

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•1•7•1•Updated Jan 24, 2025Jan 24, 2025

    • DeepPatientLevelPrediction

      Public
      An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.
      hadesdeep-learning
      R
      •4•12•23•2•Updated Jan 24, 2025Jan 24, 2025

    • CommunityDashboard

      Public
      Dashboard to monitor the health of the OHDSI community. A Flask app of Dash Dashboards for tracking public API's
      TypeScript
      •
      Apache License 2.0
      •1•6•11•0•Updated Jan 24, 2025Jan 24, 2025

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      HTML
      •90•189•30•3•Updated Jan 24, 2025Jan 24, 2025

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •168•134•130•25•Updated Jan 24, 2025Jan 24, 2025

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •139•277•213•20•Updated Jan 24, 2025Jan 24, 2025

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •75•229•222•12•Updated Jan 24, 2025Jan 24, 2025

    • circe-be

      Public
      CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5
      cohort-definitions
      Java
      •
      Apache License 2.0
      •13•9•7•7•Updated Jan 24, 2025Jan 24, 2025

    • Achilles

      Public
      Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
      R
      •124•133•48•4•Updated Jan 23, 2025Jan 23, 2025

    • PhenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•2•26•0•Updated Jan 23, 2025Jan 23, 2025

    • CureIdRegistry

      Public
      TSQL
      •9•14•3•3•Updated Jan 23, 2025Jan 23, 2025

    • EvidenceNetwork

      Public
      Apache License 2.0
      •0•0•7•0•Updated Jan 23, 2025Jan 23, 2025

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •7•12•35•2•Updated Jan 23, 2025Jan 23, 2025

    • Arachne

      Public
      Arachne Data Node web application
      TypeScript
      •
      Apache License 2.0
      •1•1•11•1•Updated Jan 23, 2025Jan 23, 2025

    • omock

      Public
      R
      •
      Apache License 2.0
      •1•2•4•0•Updated Jan 23, 2025Jan 23, 2025

    • Characterization

      Public
      Various types of characterizations of a target and outcome cohort.
      R
      •5•3•5•4•Updated Jan 22, 2025Jan 22, 2025

    • MethodEvaluation

      Public
      An R package for the evaluation of estimation methods
      hades
      R
      •6•8•3•0•Updated Jan 22, 2025Jan 22, 2025

    • DatabaseConnector

      Public
      An R package for connecting to databases using JDBC.
      hades
      R
      •84•55•32•2•Updated Jan 22, 2025Jan 22, 2025

    • context

      Public
      A python library to create knowledge graphs for context-aware prediction modeling and more.
      Python
      •0•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • ArachneExecutionEngine

      Public
      Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
      PLpgSQL
      •8•8•1•1•Updated Jan 21, 2025Jan 21, 2025

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•1•40•3•Updated Jan 20, 2025Jan 20, 2025

    • bayes-bridge

      Public
      Bayesian sparse regression with regularized shrinkage and conjugate gradient acceleration
      Jupyter Notebook
      •7•19•5•0•Updated Jan 19, 2025Jan 19, 2025

    • drat

      Public
      drat repository for OHDSI R packages
      7•5•0•0•Updated Jan 16, 2025Jan 16, 2025

    • Bouzyges

      Public
      Python
      •
      GNU General Public License v3.0
      •1•4•0•0•Updated Jan 15, 2025Jan 15, 2025

    • Andromeda

      Public
      AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.
      hades
      R
      •13•11•18•0•Updated Jan 15, 2025Jan 15, 2025

    • OhdsiReportGenerator

      Public
      Code to extract data from the OHDSI results structure and generate plots, presentations and reports
      R
      •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • MIMIC

      Public
      MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.
      Python
      •
      Apache License 2.0
      •25•75•20•3•Updated Jan 14, 2025Jan 14, 2025