how to build local metavir2

[douluojiaofu]

Hi! I heard metavir2 from articles! I have known that it is a great tool , but i never found its online-web. For that ,I want to build local metavir2 to use.
I docker pull successfully!
Next, when I typed these words : "metavirs -h", it showed me "command not found"
Did i missed some procedure?
How can I build local metavir2 using docker way?

[skchronicles]

Hey @douluojiaofu,

I am more than happy to help. I am one of the authors of the tool along with @schaughencyp.

I just have a quick question. Where did you hear about metavirs? I am just curious because the pipeline has not been published yet in a journal.

Can you copy and paste all the commands you ran to setup and run the metavirs pipeline?

To quickly get usage information, you would run this command if its not in your $PATH:

# Install metavirs
git clone https://github.com/OpenOmics/metavirs.git
cd metavirs/
./metavirs -h 

With that being said, to setup the pipeline on a new computer or target system, you would need to run the git clone command above along with the install and cache subcommands. This will download required reference files and software containers onto your local filesystem.

Once that completes, you can run the pipeline with the run subcommand. Since you are not running the pipeline on Biowulf cluster, you will need to use the --sif-cache and --resource-bundle options.

Please let us know if you have any questions.

Best Regards,
@skchronicles

[douluojiaofu]

Dear professor, Thank you for your help!! I herad about metavir2 from review (https://www.mdpi.com/1999-4915/15/2/587 ). Many other articles also talked about metavir 2. I didn't find metavir2's web which researcher can upload metagenomics data and get analysis report.Then i typed "metavir" in github,i found metavirs. At last ,thank you for your help!! I will try to install metavirs beacuse it's a good tool for researcher. Best Regards, @douluojiaofu At 2023-02-28 07:33:55, "Skyler Kuhn" ***@***.***> wrote: Hey @douluojiaofu, I am more than happy to help. I am one of the authors of the tool along with @schaughencyp. I just have a quick question. Where did you hear about metavirs? I am just curious because the pipeline has not been published yet in a journal. Can you copy and paste all the commands you ran to setup and run the metavirs pipeline? To quickly get usage information, you would run this command if its not in your $PATH: # Install metavirs git clone https://github.com/OpenOmics/metavirs.git cd metavirs/ ./metavirs -h With that being said, to setup the pipeline on a new computer or target system, you would need to run the git clone command above along with the install and cache subcommands. This will download required reference files and software containers onto your local filesystem. Once that completes, you can run the pipeline with the run subcommand. Since you are not running the pipeline on Biowulf cluster, you will need to use the --sif-cache and --resource-bundle options. Please let us know if you have any questions. Best Regards, @skchronicles — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.Message ID: ***@***.***>

[skchronicles]

@douluojiaofu
Okay, I read through the paper you linked, and I found a link to the Metavir2 github repo here referenced in the paper:

It appears to be a different tool with a similar name.