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@ParkerICI Parker Institute for Cancer Immunotherapy

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    35 repositories

    • amadeus-trial-data

      Public
      Clinical and translational datasets from the PICI-sponsored AMADEUS clinical trial
      0•0•0•0•Updated Sep 3, 2024Sep 3, 2024

    • MORRISON-1-public

      Public
      public facing repository for processed data related to MORRISON 1
      1•5•0•0•Updated Jun 6, 2024Jun 6, 2024

    • blockoid

      Public
      A lightweight Clojurescript wrapper around Blockly
      Clojure
      •
      MIT License
      •1•36•1•0•Updated Dec 29, 2023Dec 29, 2023

    • prince-trial-data

      Public
      Public release of PRINCE trial data
      3•2•0•0•Updated Aug 18, 2023Aug 18, 2023

    • vite

      Public
      R package for analysis of single-cell data using graphs
      scaffoldsingle-cellflow-cytometrymass-cytometryfcs-filesgraph
      R
      •
      GNU General Public License v3.0
      •4•10•6•1•Updated Jun 8, 2023Jun 8, 2023

    • kumquat

      Public
      R
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Jan 18, 2023Jan 18, 2023

    • viv

      Public
      Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
      JavaScript
      •
      MIT License
      •46•0•0•0•Updated Nov 1, 2022Nov 1, 2022

    • sitc2022_brain_tumor_poster

      Public
      0•0•0•0•Updated Oct 21, 2022Oct 21, 2022

    • covid-19

      Public
      Ruby
      •0•0•0•4•Updated Oct 20, 2022Oct 20, 2022

    • mesmer-wdl-workflow

      Public
      WDL
      •0•3•0•0•Updated Sep 6, 2022Sep 6, 2022

    • premessa

      Public
      R package for pre-processing of mass and flow cytometry data
      preprocessingcytofflow-cytometrymass-cytometrynormalizationfcs-files
      R
      •
      GNU General Public License v3.0
      •24•42•21•0•Updated Sep 6, 2022Sep 6, 2022

    • packages

      Public
      Javascript libraries packaged up with Google Closure externs
      JavaScript
      •816•0•0•0•Updated Aug 9, 2022Aug 9, 2022

    • vitessce

      Public
      Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
      JavaScript
      •
      MIT License
      •43•0•0•0•Updated Aug 3, 2022Aug 3, 2022

    • panorama

      Public
      R package for interactive visualization and analysis of single-cell data
      scaffoldgraphmlcytofflow-cytometrymass-cytometryfcs-files
      R
      •
      GNU General Public License v3.0
      •2•11•3•0•Updated Feb 21, 2022Feb 21, 2022

    • single_cell_workflows

      Public
      Dockstore wdl workflows for single cell processing (*RNAseq, snATACseq)
      WDL
      •
      MIT License
      •0•0•0•0•Updated Dec 26, 2021Dec 26, 2021

    • mibi_processing

      Public
      Tools to process MIBI images
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Dec 18, 2021Dec 18, 2021

    • oz

      Public
      Data visualizations in Clojure and ClojureScript using Vega and Vega-lite
      Clojure
      •
      Eclipse Public License 1.0
      •74•0•0•0•Updated Aug 27, 2021Aug 27, 2021

    • datalogr

      Public
      An R package to write Datalog queries and interact with a Datomic database
      R
      •
      GNU Lesser General Public License v3.0
      •0•11•0•0•Updated Aug 12, 2021Aug 12, 2021

    • grappolo

      Public
      R package to cluster single-cell data and generate features that can be used for model building
      single-cellflow-cytometrymass-cytometryclusteringfcs-files
      R
      •
      GNU General Public License v3.0
      •2•9•1•0•Updated Aug 10, 2021Aug 10, 2021

    • pixi-plot

      Public
      TypeScript
      •0•2•0•0•Updated Jul 9, 2021Jul 9, 2021

    • ring-oauth2

      Public archive
      OAuth 2.0 client middleware for Ring
      Clojure
      •38•0•0•0•Updated Feb 10, 2021Feb 10, 2021

    • jekyll-google-auth

      Public
      Ruby
      •0•0•0•0•Updated Oct 5, 2020Oct 5, 2020

    • tesla

      Public
      Repository for published code from Tumor nEoantigen SeLection Alliance
      R
      •1•4•0•0•Updated Sep 24, 2020Sep 24, 2020

    • Vectra_Imaging_pipeline

      Public
      Vectra Imaging Quality Control and Processing Pipeline
      Jupyter Notebook
      •2•0•0•0•Updated Jan 31, 2020Jan 31, 2020

    • datomic-query-improver

      Public
      Heuristics for improving generated and ad hoc Datomic query performance.
      Clojure
      •
      Apache License 2.0
      •0•15•1•0•Updated Nov 23, 2019Nov 23, 2019

    • single-cell-mutations

      Public
      vartrix pipeline
      R
      •0•1•0•0•Updated Oct 9, 2019Oct 9, 2019

    • jekyll-auth

      Public
      A simple way to use GitHub OAuth to serve a protected Jekyll site to your GitHub organization
      Ruby
      •114•0•0•0•Updated Oct 5, 2019Oct 5, 2019

    • lohhla-container

      Public
      A container for LOHHLA
      WDL
      •
      GNU General Public License v3.0
      •2•1•1•0•Updated Oct 1, 2019Oct 1, 2019

    • flow-analysis-tutorial

      Public
      A tutorial for the analysis of high-dimensional flow cytometry data
      8•25•3•0•Updated Aug 28, 2019Aug 28, 2019

    • fcs-write

      Public
      Node based FCS (Flow Cytometry Standard) file writer.
      0•0•0•0•Updated Aug 26, 2019Aug 26, 2019