Repositories list

• pathvisio

  Public
  PathVisio - pathway editor, visualization and analysis software

  Java

  •

  Apache License 2.0

  •21•22•94•0•Updated Oct 3, 2024Oct 3, 2024

• plugin-repo

  Public
  Plugin repository for PathVisio

  Apache License 2.0

  •0•0•0•0•Updated Oct 3, 2024Oct 3, 2024

• pathvisio.github.io

  Public
  PathVisio website and tutorials (under development)

  HTML

  •

  MIT License

  •4•0•8•2•Updated Sep 3, 2024Sep 3, 2024

• pathvisio-book

  Public
  📖 PathVisio

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •3•3•0•0•Updated Jan 15, 2024Jan 15, 2024

• libGPML

  Public
  Java library for reading / writing GPML files

  Java

  •

  Apache License 2.0

  •4•2•5•0•Updated Oct 14, 2023Oct 14, 2023

• pathvisio4-ant

  Public
  Java

  •

  Apache License 2.0

  •3•0•19•0•Updated Jan 27, 2023Jan 27, 2023

• libgpml-javadoc

  Public
  libGPML Java documentation

  HTML

  •0•0•0•0•Updated Aug 27, 2022Aug 27, 2022

• PathVisioRPC

  Public
  PathVisioRPC is an XML-RPC implementation of PathVisio that allows users to create and edit biological pathways, visualize data on pathways, perform pathway statistics and exports results in various image formats. Since most major programming languages have a library/module providing XML-RPC functionality, this application enables users to acces…

  Java

  •5•8•6•1•Updated Apr 1, 2022Apr 1, 2022

• homology.mapper

  Public
  GPML Homology Mapper

  Java

  •

  Apache License 2.0

  •2•0•1•0•Updated Mar 29, 2022Mar 29, 2022

• pathvisio4-maven

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 2, 2021Dec 2, 2021

• BH2021

  Public
  biohackeu21

  MIT License

  •0•0•0•0•Updated Nov 11, 2021Nov 11, 2021

• GPML

  Public
  Graphical Pathway Markup Language

  Python

  •3•5•9•0•Updated Oct 21, 2021Oct 21, 2021

• OSSRH-73582

  Public
  0•0•0•0•Updated Sep 28, 2021Sep 28, 2021

• WP-plugin

  Public
  Plugin for PathVisio that provides a WikiPathways client.

  Java

  •

  Apache License 2.0

  •5•1•10•3•Updated Mar 31, 2020Mar 31, 2020

• GO-plugin

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated May 1, 2019May 1, 2019

• RPathVisio

  Public
  R package for PathVisioRPC

  R

  •4•2•2•0•Updated Apr 1, 2019Apr 1, 2019

• tutorials

  Public
  Tutorials and workshop material for PathVisio

  3•0•0•0•Updated Oct 8, 2018Oct 8, 2018

• org.pathvisio.typeconverter

  Public
  Enables the conversion of pathway elements into other types (e.g. Label into Metabolite)

  Java

  •

  Apache License 2.0

  •1•1•5•1•Updated Apr 25, 2018Apr 25, 2018

• FindYourInteraction

  Public
  PathVisio plugin to find relevant metabolic reactions from Rhea

  reactionsmetabolismpathways+ 2metabolic-pathwaysrhea

  Java

  •

  Apache License 2.0

  •1•1•1•0•Updated Apr 25, 2018Apr 25, 2018

• GSEA-plugin

  Public
  GSEA plugin for PathVisio

  pathwaygseapathvisio+ 2genesetspvplugin

  Java

  •1•0•1•0•Updated Dec 18, 2017Dec 18, 2017

• libGPML-old

  Public
  library to read/write GPML

  Java

  •

  Apache License 2.0

  •4•0•5•0•Updated Aug 24, 2017Aug 24, 2017

• PathwayLoom

  Public
  PathwayLoom plugin for PathVisio

  pathwaypathvisiopvplugin

  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Feb 14, 2017Feb 14, 2017

• org.pathvisio.tissueanalyzer

  Public
  Tissue Analyser Plugin

  Java

  •1•0•9•0•Updated Jul 27, 2016Jul 27, 2016

• mappbuilder

  Public
  MAPPBuilder plugin for PathVisio

  Java

  •

  Apache License 2.0

  •2•0•5•0•Updated Mar 8, 2016Mar 8, 2016

• RegInt-Plugin

  Public
  Visualize regulatory interactions in the side panel of PathVisio

  Java

  •

  Apache License 2.0

  •1•1•0•0•Updated Dec 18, 2015Dec 18, 2015

• biopax-plugin

  Public
  PathVisio plugin to import and export pathways in BioPAX format

  Web Ontology Language

  •

  Apache License 2.0

  •3•1•1•0•Updated Apr 23, 2015Apr 23, 2015

• MiPaSt

  Public
  miRNA pathway statistics plugin for PathVisio

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 13, 2015Apr 13, 2015

• pv-minimap

  Public
  Plugin for PathVisio that adds a MiniMap side panel for navigation in large pathways

  1•0•0•0•Updated Sep 6, 2013Sep 6, 2013